Macromolecule Annotations for the Entities in PDB 4AQY

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
B2 4aqyB02 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin bin
C1 4aqyC01 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3
C2 4aqyC02 Alpha Beta 2-Layer Sandwich Ribosomal protein S3 C-terminal domain
D1 4aqyD01 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41; Chain A, domain 1 Ribosomal Protein S4 Delta 41; Chain A, domain 1
D2 4aqyD02 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA- pckA Intergenic Region; Chain A Structural Genomics Hypothetical 15.5 Kd Protein In Mrca- pcka Intergenic Region; Chain
E1 4aqyE01 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain
E2 4aqyE02 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2
F 4aqyF00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
G 4aqyG00 Mainly Alpha Orthogonal Bundle Ribosomal Protein S7 Ribosomal Protein S7;
H2 4aqyH02 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1
I 4aqyI00 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2
K 4aqyK00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
L 4aqyL00 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
M1 4aqyM01 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein; domain 3
M2 4aqyM02 Few Secondary Structures Irregular 30s ribosomal protein s13; domain 2 30s ribosomal protein s13, domain 2
N 4aqyN00 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N
O 4aqyO00 Mainly Alpha Orthogonal Bundle Helix Hairpins
R 4aqyR00 Few Secondary Structures Irregular 30s Ribosomal Protein S18 30s Ribosomal Protein S18
S 4aqyS00 Alpha Beta 2-Layer Sandwich 30s Ribosomal Protein S19; Chain A 30s Ribosomal Protein S19; Chain A
T 4aqyT00 Mainly Alpha Up-down Bundle Methane Monooxygenase Hydroxylase; Chain G, domain 1

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 16S RIBOSOMAL RNA (4AQY:A)
  • none
  • none
  • none
B 30S RIBOSOMAL PROTEIN S2 (4AQY:B)
C 30S RIBOSOMAL PROTEIN S3 (4AQY:C)
D 30S RIBOSOMAL PROTEIN S4 (4AQY:D)
E 30S RIBOSOMAL PROTEIN S5 (4AQY:E)
F 30S RIBOSOMAL PROTEIN S6 (4AQY:F)
G 30S RIBOSOMAL PROTEIN S7 (4AQY:G)
H 30S RIBOSOMAL PROTEIN S8 (4AQY:H)
I 30S RIBOSOMAL PROTEIN S9 (4AQY:I)
J 30S RIBOSOMAL PROTEIN S10 (4AQY:J)
K 30S RIBOSOMAL PROTEIN S11 (4AQY:K)
L 30S RIBOSOMAL PROTEIN S12 (4AQY:L)
M 30S RIBOSOMAL PROTEIN S13 (4AQY:M)
N 30S RIBOSOMAL PROTEIN S14 (4AQY:N)
O 30S RIBOSOMAL PROTEIN S15 (4AQY:O)
P 30S RIBOSOMAL PROTEIN S16 (4AQY:P)
Q 30S RIBOSOMAL PROTEIN S17 (4AQY:Q)
R 30S RIBOSOMAL PROTEIN S18 (4AQY:R)
S 30S RIBOSOMAL PROTEIN S19 (4AQY:S)
T 30S RIBOSOMAL PROTEIN S20 (4AQY:T)
V 30S RIBOSOMAL PROTEIN THX (4AQY:V)
  • none
W 5'-R(*UP*UP*CP*AP*AP*AP)-3' (4AQY:W)
  • none
  • none
  • none
Z 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)- 3' (4AQY:Z)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description