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High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome
Annotation data related to this entry.
3ZF7
  •   Protein Family Annotation: Pfam Classification   Hide
    Chain Pfam Accession Pfam Family Identifier Pfam Description Type Comment
    I PF00828   Ribosomal_L18e Ribosomal protein L18e/L15 Family
    l PF01247   Ribosomal_L35Ae Ribosomal protein L35Ae Family
    S PF01775   Ribosomal_L18ae Ribosomal L18ae/LX protein domain Domain This family includes eukaryotic L18ae as well as archaebacterial specific LX. Ribosomal protein L18ae forms part of the 60S ribosomal subunit. Source: Pfam  
    L PF00281   Ribosomal_L5 Ribosomal protein L5 Domain Source: Pfam  
    j PF01199   Ribosomal_L34e Ribosomal protein L34e Family
    m PF01158   Ribosomal_L36e Ribosomal protein L36e Family
    k PF00831   Ribosomal_L29 Ribosomal L29 protein Family
    P PF00467   KOW KOW motif Family
    w PF00327   Ribosomal_L30 Ribosomal protein L30p/L7e Domain This family includes prokaryotic L30 and eukaryotic L7. Source: Pfam  
    b PF00828   Ribosomal_L18e Ribosomal protein L18e/L15 Family
    y PF00347   Ribosomal_L6 Ribosomal protein L6 Domain Source: Pfam  
    p PF01781   Ribosomal_L38e Ribosomal L38e protein family Family
    n PF01907   Ribosomal_L37e Ribosomal protein L37e Family
    J PF00687   Ribosomal_L1 Ribosomal protein L1p/L10e family Domain This family includes prokaryotic L1 and eukaryotic L10. Source: Pfam  
    h PF01198   Ribosomal_L31e Ribosomal protein L31e Family
    K PF00252   Ribosomal_L16 Ribosomal protein L16p/L10e Family
    X PF00276   Ribosomal_L23 Ribosomal protein L23 Family
    d PF01779   Ribosomal_L29e Ribosomal L29e protein family Family
    e PF00181   Ribosomal_L2 Ribosomal Proteins L2, RNA binding domain Domain Source: Pfam  
    s PF01020   Ribosomal_L40e Ribosomal L40e family Family
    o PF01780   Ribosomal_L37ae Ribosomal L37ae protein family Family
    v PF01159   Ribosomal_L6e Ribosomal protein L6e Family
    t PF00935   Ribosomal_L44 Ribosomal protein L44 Family
    w PF08079   Ribosomal_L30_N Ribosomal L30 N-terminal domain Domain This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. Source: Pfam  
    x PF01248   Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Domain This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. Source: Pfam  
    f PF00297   Ribosomal_L3 Ribosomal protein L3 Family
    W PF00238   Ribosomal_L14 Ribosomal protein L14p/L23e Domain Source: Pfam  
    c PF01778   Ribosomal_L28e Ribosomal L28e protein family Family
    Y PF01246   Ribosomal_L24e Ribosomal protein L24e Family
    U PF01157   Ribosomal_L21e Ribosomal protein L21e Family
    g PF01248   Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Domain This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. Source: Pfam  
    a PF00467   KOW KOW motif Family
    a PF01777   Ribosomal_L27e Ribosomal L27e protein family Family
    r PF00573   Ribosomal_L4 Ribosomal protein L4/L1 family Family
    V PF01776   Ribosomal_L22e Ribosomal L22e protein family Family
    R PF00237   Ribosomal_L22 Ribosomal protein L22p/L17e Domain This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Source: Pfam  
    O PF00572   Ribosomal_L13 Ribosomal protein L13 Family
    r PF14374   Ribos_L4_asso_C 60S ribosomal protein L4 C-terminal domain Domain This family is found at the very C-terminal of 60 ribosomal L4 proteins. Source: Pfam  
    X PF03939   Ribosomal_L23eN Ribosomal protein L23, N-terminal domain Family
    M PF03946   Ribosomal_L11_N Ribosomal protein L11, N-terminal domain Domain The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Source: Pfam  
    u PF14204   Ribosomal_L18_c Ribosomal L18 C-terminal region Domain This domain is the C-terminal end of ribosomal L18/L5 proteins. Source: Pfam  
    M PF00298   Ribosomal_L11 Ribosomal protein L11, RNA binding domain Domain Source: Pfam  
    P PF01929   Ribosomal_L14e Ribosomal protein L14 Family
    q PF00832   Ribosomal_L39 Ribosomal L39 protein Family
    y PF00347   Ribosomal_L6 Ribosomal protein L6 Domain Source: Pfam  
    u PF00861   Ribosomal_L18p Ribosomal L18p/L5e family Family
    Q PF00827   Ribosomal_L15e Ribosomal L15 Family
    N PF01294   Ribosomal_L13e Ribosomal protein L13e Family
    Z PF00467   KOW KOW motif Family
    T PF01280   Ribosomal_L19e Ribosomal protein L19e Family
    e PF03947   Ribosomal_L2_C Ribosomal Proteins L2, C-terminal domain Domain Source: Pfam  
    i PF01655   Ribosomal_L32e Ribosomal protein L32 Family
    L PF00673   Ribosomal_L5_C ribosomal L5P family C-terminus Domain This region is found associated with Pfam:PF00281. Source: Pfam  
     
  •   Gene Product Annotation: GO Terms   Hide
    Polymer Molecular Function Biological Process Cellular Component
    60S RIBOSOMAL PROTEIN L18 (3ZF7:I)
    • none
    • none
    RIBOSOMAL PROTEIN (3ZF7:J)
    • none
    • none
    60S RIBOSOMAL PROTEIN L10, PUTATIVE (3ZF7:K)
    • none
    • none
    60S RIBOSOMAL PROTEIN L11, PUTATIVE (3ZF7:L)
    • none
    • none
    60S RIBOSOMAL PROTEIN L12, PUTATIVE (3ZF7:M)
    • none
    • none
    60S RIBOSOMAL PROTEIN L13 (3ZF7:N)
    • none
    60S RIBOSOMAL PROTEIN L13A, PUTATIVE (3ZF7:O)
    • none
    • none
    PROBABLE 60S RIBOSOMAL PROTEIN L14 (3ZF7:P)
    • none
    • none
    RIBOSOMAL PROTEIN L15 (3ZF7:Q)
    • none
    • none
    60S RIBOSOMAL PROTEIN L17, PUTATIVE (3ZF7:R)
    • none
    • none
    60S RIBOSOMAL PROTEIN L18A (3ZF7:S)
    • none
    • none
    60S RIBOSOMAL PROTEIN L19, PUTATIVE (3ZF7:T)
    • none
    • none
    60S RIBOSOMAL PROTEIN L21E, PUTATIVE (3ZF7:U)
    • none
    • none
    60S RIBOSOMAL PROTEIN L22, PUTATIVE (3ZF7:V)
    • none
    • none
    60S RIBOSOMAL PROTEIN L23, PUTATIVE (3ZF7:W)
    • none
    • none
    60S RIBOSOMAL PROTEIN L23A (3ZF7:X)
    • none
    • none
    60S RIBOSOMAL PROTEIN L24, PUTATIVE (3ZF7:Y)
    • none
    • none
    60S RIBOSOMAL PROTEIN L26, PUTATIVE (3ZF7:Z)
    • none
    • none
    60S RIBOSOMAL PROTEIN L27, PUTATIVE (3ZF7:a)
    • none
    • none
    • none
    60S RIBOSOMAL PROTEIN L27A (3ZF7:b)
    • none
    • none
    • none
    60S RIBOSOMAL PROTEIN L28, PUTATIVE (3ZF7:c)
    • none
    • none
    • none
    60S RIBOSOMAL PROTEIN L29, PUTATIVE (3ZF7:d)
    • none
    • none
    • none
    60S RIBOSOMAL PROTEIN L2, PUTATIVE (3ZF7:e)
    • none
    • none
    • none
    RIBOSOMAL PROTEIN L3, MITOCHONDRIAL, PUTATIVE (3ZF7:f)
    • none
    • none
    • none
    60S RIBOSOMAL PROTEIN L30 (3ZF7:g)
    • none
    • none
    • none
    60S RIBOSOMAL SUBUNIT PROTEIN L31, PUTATIVE (3ZF7:h)
    • none
    • none
    • none
    60S RIBOSOMAL PROTEIN L32, PUTATIVE (3ZF7:i)
    • none
    • none
    • none
    60S RIBOSOMAL PROTEIN L34, PUTATIVE (3ZF7:j)
    • none
    • none
    • none
    60S RIBOSOMAL PROTEIN L35, PUTATIVE (3ZF7:k)
    • none
    • none
    • none
    60S RIBOSOMAL PROTEIN L35A, PUTATIVE (3ZF7:l)
    • none
    • none
    • none
    RIBOSOMAL PROTEIN L36, PUTATIVE (3ZF7:m)
    • none
    • none
    • none
    RIBOSOMAL PROTEIN L37 (3ZF7:n)
    • none
    • none
    • none
    60S RIBOSOMAL PROTEIN L37A, PUTATIVE (3ZF7:o)
    • none
    • none
    • none
    60S RIBOSOMAL PROTEIN L38, PUTATIVE (3ZF7:p)
    • none
    • none
    • none
    60S RIBOSOMAL PROTEIN L39, PUTATIVE (3ZF7:q)
    • none
    • none
    • none
    60S RIBOSOMAL PROTEIN L4 (3ZF7:r)
    • none
    • none
    • none
    UBIQUITIN-60S RIBOSOMAL PROTEIN L40 (3ZF7:s)
    • none
    • none
    • none
    60S RIBOSOMAL PROTEIN L44 (3ZF7:t)
    • none
    • none
    • none
    60S RIBOSOMAL PROTEIN L5, PUTATIVE (3ZF7:u)
    • none
    • none
    • none
    60S RIBOSOMAL PROTEIN L6, PUTATIVE (3ZF7:v)
    • none
    • none
    • none
    60S RIBOSOMAL PROTEIN L7, PUTATIVE (3ZF7:w)
    • none
    • none
    • none
    60S RIBOSOMAL PROTEIN L7A, PUTATIVE (3ZF7:x)
    • none
    • none
    • none
    60S RIBOSOMAL PROTEIN L9, PUTATIVE (3ZF7:y)
    • none
    • none
    • none
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Annotations in orange boxes have been gathered from external resources.