3T1Y

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin


Macromolecule Annotations for the Entities in PDB 3T1Y

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
B2 3t1yB02 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin bin
C1 3t1yC01 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3
C2 3t1yC02 Alpha Beta 2-Layer Sandwich Ribosomal protein S3 C-terminal domain
D1 3t1yD01 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41; Chain A, domain 1 Ribosomal Protein S4 Delta 41; Chain A, domain 1
D2 3t1yD02 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA- pckA Intergenic Region; Chain A Structural Genomics Hypothetical 15.5 Kd Protein In Mrca- pcka Intergenic Region; Chain
E1 3t1yE01 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain
E2 3t1yE02 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2
F 3t1yF00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
G 3t1yG00 Mainly Alpha Orthogonal Bundle Ribosomal Protein S7 Ribosomal Protein S7;
H2 3t1yH02 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1
I 3t1yI00 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2
K 3t1yK00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
L 3t1yL00 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
M1 3t1yM01 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein; domain 3
M2 3t1yM02 Few Secondary Structures Irregular 30s ribosomal protein s13; domain 2 30s ribosomal protein s13, domain 2
N 3t1yN00 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N
O 3t1yO00 Mainly Alpha Orthogonal Bundle Helix Hairpins
R 3t1yR00 Few Secondary Structures Irregular 30s Ribosomal Protein S18 30s Ribosomal Protein S18
S 3t1yS00 Alpha Beta 2-Layer Sandwich 30s Ribosomal Protein S19; Chain A 30s Ribosomal Protein S19; Chain A
T 3t1yT00 Mainly Alpha Up-down Bundle Methane Monooxygenase Hydroxylase; Chain G, domain 1

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 16S rRNA (3T1Y:A)
  • none
  • none
  • none
B 30S ribosomal protein S2 (3T1Y:B)
C 30S ribosomal protein S3 (3T1Y:C)
D 30S ribosomal protein S4 (3T1Y:D)
E 30S ribosomal protein S5 (3T1Y:E)
F 30S ribosomal protein S6 (3T1Y:F)
G 30S ribosomal protein S7 (3T1Y:G)
H 30S ribosomal protein S8 (3T1Y:H)
I 30S ribosomal protein S9 (3T1Y:I)
J 30S ribosomal protein S10 (3T1Y:J)
K 30S ribosomal protein S11 (3T1Y:K)
L 30S ribosomal protein S12 (3T1Y:L)
M 30S ribosomal protein S13 (3T1Y:M)
N 30S ribosomal protein S14 type Z (3T1Y:N)
O 30S ribosomal protein S15 (3T1Y:O)
P 30S ribosomal protein S16 (3T1Y:P)
Q 30S ribosomal protein S17 (3T1Y:Q)
R 30S ribosomal protein S18 (3T1Y:R)
S 30S ribosomal protein S19 (3T1Y:S)
T 30S ribosomal protein S20 (3T1Y:T)
V 30S ribosomal protein Thx (3T1Y:V)
  • none
W mRNA A-site fragment (3T1Y:W)
  • none
  • none
  • none
X tRNA ASL human Lys3 (3T1Y:X)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description