Macromolecule Annotations for the Entities in PDB 3KLF

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A1 3klfA01 Alpha Beta Roll HIV Type 1 Reverse Transcriptase; Chain A, domain 1 HIV Type 1 Reverse Transcriptase, subunit A, domain 1
A2 3klfA02 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
A3 3klfA03 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
A4 3klfA04 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
A5 3klfA05 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
B1 3klfB01 Alpha Beta Roll HIV Type 1 Reverse Transcriptase; Chain A, domain 1 HIV Type 1 Reverse Transcriptase, subunit A, domain 1
B2 3klfB02 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
B3 3klfB03 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
B4 3klfB04 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
E1 3klfE01 Alpha Beta Roll HIV Type 1 Reverse Transcriptase; Chain A, domain 1 HIV Type 1 Reverse Transcriptase, subunit A, domain 1
E2 3klfE02 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
E3 3klfE03 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
E4 3klfE04 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
E5 3klfE05 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
F1 3klfF01 Alpha Beta Roll HIV Type 1 Reverse Transcriptase; Chain A, domain 1 HIV Type 1 Reverse Transcriptase, subunit A, domain 1
F2 3klfF02 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
F3 3klfF03 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
F4 3klfF04 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
I1 3klfI01 Alpha Beta Roll HIV Type 1 Reverse Transcriptase; Chain A, domain 1 HIV Type 1 Reverse Transcriptase, subunit A, domain 1
I2 3klfI02 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
I3 3klfI03 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
I4 3klfI04 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
I5 3klfI05 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
J1 3klfJ01 Alpha Beta Roll HIV Type 1 Reverse Transcriptase; Chain A, domain 1 HIV Type 1 Reverse Transcriptase, subunit A, domain 1
J2 3klfJ02 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
J3 3klfJ03 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
J4 3klfJ04 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
M1 3klfM01 Alpha Beta Roll HIV Type 1 Reverse Transcriptase; Chain A, domain 1 HIV Type 1 Reverse Transcriptase, subunit A, domain 1
M2 3klfM02 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
M3 3klfM03 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
M4 3klfM04 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
M5 3klfM05 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
N1 3klfN01 Alpha Beta Roll HIV Type 1 Reverse Transcriptase; Chain A, domain 1 HIV Type 1 Reverse Transcriptase, subunit A, domain 1
N2 3klfN02 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
N3 3klfN03 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
N4 3klfN04 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
B PF06815 RVT_connect Reverse transcriptase connection domain Domain This domain is known as the connection domain. This domain lies between the thumb and palm domains [1]. PFAM PF06815
A PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) Family
A PF06817 RVT_thumb Reverse transcriptase thumb domain Domain This domain is known as the thumb domain. It is composed of a four helix bundle [1]. PFAM PF06817
B PF06817 RVT_thumb Reverse transcriptase thumb domain Domain This domain is known as the thumb domain. It is composed of a four helix bundle [1]. PFAM PF06817
A PF06815 RVT_connect Reverse transcriptase connection domain Domain This domain is known as the connection domain. This domain lies between the thumb and palm domains [1]. PFAM PF06815
A PF00075 RNase_H RNase H Domain RNase H digests the RNA strand of an RNA/DNA hybrid. Important enzyme in retroviral replication cycle, and often found as a domain associated with reverse transcriptases. Structure is a mixed alpha+beta fold with three a/b/a layers. PFAM PF00075
B PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) Family

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,E,I,M Reverse transcriptase/ribonuclease H (3KLF:A,E,I,M)
  • none
  • none
B,F,J,N p51 RT (3KLF:B,F,J,N)
  • none
  • none
  • none
C,G,K,O DNA (5'-D(*AP*T*GP*CP*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)- 3') (3KLF:C,G,K,O)
  • none
  • none
  • none
D,H,L,P DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(2DA))- 3') (3KLF:D,H,L,P)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description