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Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
Annotation data related to this entry.
3JWO
  •   Protein Family Annotation: Pfam Classification   Hide
    Chain Pfam Accession Pfam Family Identifier Pfam Description Type Comment
    L PF13927   Ig_3 Immunoglobulin domain Domain This family contains immunoglobulin-like domains. Source: Pfam  
    L PF07679   I-set Immunoglobulin I-set domain Domain Source: Pfam  
    C PF07679   I-set Immunoglobulin I-set domain Domain Source: Pfam  
    C PF13895   Ig_2 Immunoglobulin domain Domain This domain contains immunoglobulin-like domains. Source: Pfam  
    C PF13895   Ig_2 Immunoglobulin domain Domain This domain contains immunoglobulin-like domains. Source: Pfam  
    L PF07654   C1-set Immunoglobulin C1-set domain Domain Source: Pfam  
    A PF00516   GP120 Envelope glycoprotein GP120 Family
    H PF07654   C1-set Immunoglobulin C1-set domain Domain Source: Pfam  
    L PF00047   ig Immunoglobulin domain Domain Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Source: Pfam  
    C PF00047   ig Immunoglobulin domain Domain Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Source: Pfam  
    L PF13895   Ig_2 Immunoglobulin domain Domain This domain contains immunoglobulin-like domains. Source: Pfam  
    H PF07686   V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Source: Pfam  
    A PF00516   GP120 Envelope glycoprotein GP120 Family
    L PF08205   C2-set_2 CD80-like C2-set immunoglobulin domain Domain These domains belong to the immunoglobulin superfamily. Source: Pfam  
    L PF13895   Ig_2 Immunoglobulin domain Domain This domain contains immunoglobulin-like domains. Source: Pfam  
    H PF13927   Ig_3 Immunoglobulin domain Domain This family contains immunoglobulin-like domains. Source: Pfam  
    C PF11465   Receptor_2B4 Natural killer cell receptor 2B4 Domain 2B4 is a transmembrane receptor which is expressed primarily on natural killer cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells [1]. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function [1]. Source: Pfam  
    L PF13927   Ig_3 Immunoglobulin domain Domain This family contains immunoglobulin-like domains. Source: Pfam  
    L PF07686   V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Source: Pfam  
    A PF00516   GP120 Envelope glycoprotein GP120 Family
    C PF07686   V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Source: Pfam  
    C PF05790   C2-set Immunoglobulin C2-set domain Domain Source: Pfam  
     
  •   Gene Product Annotation: GO Terms   Hide
    Polymer Molecular Function Biological Process Cellular Component
    HIV-1 GP120 ENVELOPE GLYCOPROTEIN (3JWO:A)
    • none
    • none
    T-cell surface glycoprotein CD4 (3JWO:C)
    • none
    FAB 48D LIGHT CHAIN (3JWO:L)
    • none
    • none
    • none
    FAB 48D Heavy CHAIN (3JWO:H)
    • none
    • none
    • none
    SUGAR (2-MER) (3JWO:)
    • none
    • none
    • none
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Annotations in orange boxes have been gathered from external resources.