Macromolecule Annotations for the Entities in PDB 3JSM

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
B PF06815 RVT_connect Reverse transcriptase connection domain Domain This domain is known as the connection domain. This domain lies between the thumb and palm domains [1]. PFAM PF06815
B PF06817 RVT_thumb Reverse transcriptase thumb domain Domain This domain is known as the thumb domain. It is composed of a four helix bundle [1]. PFAM PF06817
A PF06817 RVT_thumb Reverse transcriptase thumb domain Domain This domain is known as the thumb domain. It is composed of a four helix bundle [1]. PFAM PF06817
A PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) Family
B PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) Family
A PF00075 RNase_H RNase H Domain RNase H digests the RNA strand of an RNA/DNA hybrid. Important enzyme in retroviral replication cycle, and often found as a domain associated with reverse transcriptases. Structure is a mixed alpha+beta fold with three a/b/a layers. PFAM PF00075
A PF06815 RVT_connect Reverse transcriptase connection domain Domain This domain is known as the connection domain. This domain lies between the thumb and palm domains [1]. PFAM PF06815

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
T DNA (5'-D(*A*TP*GP*GP*TP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)- 3') (3JSM:T)
  • none
  • none
  • none
P DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(DDG))- 3') (3JSM:P)
  • none
  • none
  • none
A HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT (3JSM:A)
  • none
B HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT (3JSM:B)
  • none