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An Information Portal to 105025 Biological Macromolecular Structures

MDT Protein
Annotation data related to this entry.
3DNV
  •   Protein Family Annotation: Pfam Classification   Hide
    Chain Pfam Accession Pfam Family Identifier Pfam Description Type Comment
    B PF12844   HTH_19 Helix-turn-helix domain Domain Members of this family contains a DNA-binding helix-turn-helix domain. Source: Pfam  
    B PF13744   HTH_37 Helix-turn-helix domain Domain Members of this family contains a DNA-binding helix-turn-helix domain. Source: Pfam  
    A PF13657   Couple_hipA HipA N-terminal domain Domain This domain is found to the N-terminus of HipA-like proteins. It is also found in isolation in some proteins. Source: Pfam  
    A PF07804   HipA_C HipA-like C-terminal domain Domain The members of this family are similar to a region close to the C-terminus of the HipA protein expressed by various bacterial species (for example Swiss:P23874). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis [1]. When expressed alone, it is toxic to bacterial cells [1], but it is usually tightly associated with HipB [2], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products [2]. Source: Pfam  
    B PF01381   HTH_3 Helix-turn-helix Domain This large family of DNA binding helix-turn helix proteins includes Cro Swiss:P03036 and CI Swiss:P03034. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family [1]. Source: Pfam  
    A PF07805   HipA_N HipA-like N-terminal domain Domain The members of this family are similar to a region close to the N-terminus of the HipA protein expressed by various bacterial species (for example Swiss:P23874). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis [1]. When expressed alone, it is toxic to bacterial cells [1], but it is usually tightly associated with HipB [2], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products [2]. Source: Pfam  
    B PF13443   HTH_26 Cro/C1-type HTH DNA-binding domain Domain This is a helix-turn-helix domain that probably binds to DNA. Source: Pfam  
     
  •   Gene Product Annotation: GO Terms   Hide
    Polymer Molecular Function Biological Process Cellular Component
    Protein hipA (3DNV:A)
    • none
    HTH-type transcriptional regulator hipB (3DNV:B)
    • none
    DNA (5'-D(*DAP*DCP*DTP*DAP*DTP*DCP*DCP*DCP*DCP*DTP*DTP*DAP*DAP*DGP*DGP*DGP*DGP*DAP*DTP*DAP*DG)- 3') (3DNV:T)
    • none
    • none
    • none
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Annotations in orange boxes have been gathered from external resources.