Macromolecule Annotations for the Entities in PDB 3CCV

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
11-56 d3ccv11 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
21-49 d3ccv21 All alpha proteins Non-globular all-alpha subunits of globular proteins Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e Archaeon Haloarcula marismortui [TaxId: 2238]
31-92 d3ccv31 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
B1-337 d3ccvb1 All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 Archaeon Haloarcula marismortui [TaxId: 2238]
D10-174 d3ccvd1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
F1-119 d3ccvf1 Alpha and beta proteins (a+b) Bacillus chorismate mutase-like L30e-like L30e/L7ae ribosomal proteins Ribosomal protein L7ae Archaeon Haloarcula marismortui [TaxId: 2238]
H4-166 d3ccvh1 Alpha and beta proteins (a+b) alpha/beta-Hammerhead Ribosomal protein L16p/L10e Ribosomal protein L10e Ribosomal protein L10e Archaeon Haloarcula marismortui [TaxId: 2238]
I66-129 d3ccvi1 All alpha proteins DNA/RNA-binding 3-helical bundle Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain Archaeon Haloarcula marismortui [TaxId: 2238]
J4-145 d3ccvj1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
K1-132 d3ccvk1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
L1-150 d3ccvl1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
N1-186 d3ccvn1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
O1-115 d3ccvo1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
P1-143 d3ccvp1 All alpha proteins Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Archaeon Haloarcula marismortui [TaxId: 2238]
Q1-95 d3ccvq1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
R1-150 d3ccvr1 Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Archaeon Haloarcula marismortui [TaxId: 2238]
S1-81 d3ccvs1 Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 Archaeon Haloarcula marismortui [TaxId: 2238]
T1-119 d3ccvt1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
U4-56 d3ccvu1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
V1-65 d3ccvv1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
W1-154 d3ccvw1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
X7-88 d3ccvx1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
Y95-236 d3ccvy1 Alpha and beta proteins (a/b) Barstar-like Ribosomal protein L32e Ribosomal protein L32e Ribosomal protein L32e Archaeon Haloarcula marismortui [TaxId: 2238]
Z35-106 d3ccvz1 Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37ae Ribosomal protein L37ae Archaeon Haloarcula marismortui [TaxId: 2238]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
1 3ccv100 Mainly Beta Single Sheet N-terminal domain of TfIIb
2 3ccv200 Mainly Alpha Orthogonal Bundle Atp Synthase Epsilon Chain; Chain: I; Ribosomal protein L39e
3 3ccv300 Alpha Beta Roll Nuclear Transport Factor 2; Chain: A,
A1 3ccvA01 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
A2 3ccvA02 Mainly Beta Roll SH3 type barrels.
A3 3ccvA03 Few Secondary Structures Irregular Ribosomal protein L2; domain 3 Ribosomal protein L2, domain 3
B1 3ccvB01 Few Secondary Structures Irregular Ribosomal protein L3; domain 3 Ribosomal protein L3, domain 3
B2 3ccvB02 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3 Translation factors
B3 3ccvB03 Alpha Beta 2-Layer Sandwich Ribosomal Protein L3; Chain: B; domain 2,
C 3ccvC00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L4; Chain: A;
D 3ccvD00 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A,
E1 3ccvE01 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
E2 3ccvE02 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
F 3ccvF00 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A;
H 3ccvH00 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3
I 3ccvI00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A
J 3ccvJ00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A;
K 3ccvK00 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal Protein L14;
L1 3ccvL01 Few Secondary Structures Irregular Molecule: Ribosomal Protein L15; Chain: K; domain 1
L2 3ccvL02 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
M 3ccvM00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal protein L15e Ribosomal protein l15e
N 3ccvN00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
O 3ccvO00 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
P1 3ccvP01 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1
P2 3ccvP02 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces Single Heli x bin
P3 3ccvP03 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
Q 3ccvQ00 Mainly Beta Roll SH3 type barrels. Myosin S1 fragment SH3-like barrel
R 3ccvR00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal Protein L22; Chain A
S 3ccvS00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
T 3ccvT00 Mainly Beta Roll SH3 type barrels.
U 3ccvU00 Mainly Beta Roll Ribosomal Protein L24e; Chain: T;
V 3ccvV00 Mainly Alpha Orthogonal Bundle Helix Hairpins
W1 3ccvW01 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A,
W2 3ccvW02 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3
X 3ccvX00 Alpha Beta Roll Ribosomal Protein L31e; Chain: W;
Z 3ccvZ00 Mainly Beta Single Sheet N-terminal domain of TfIIb

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
M PF00827 Ribosomal_L15e Ribosomal L15 Family
H PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e Family
F PF01248 Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Domain This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. PFAM PF01248
O PF00828 Ribosomal_L18e Ribosomal protein L18e/L15 Family
G PF00466 Ribosomal_L10 Ribosomal protein L10 Family
E PF00347 Ribosomal_L6 Ribosomal protein L6 Domain PFAM PF00347
1 PF01907 Ribosomal_L37e Ribosomal protein L37e Family
D PF00281 Ribosomal_L5 Ribosomal protein L5 Domain PFAM PF00281
S PF00276 Ribosomal_L23 Ribosomal protein L23 Family
X PF01198 Ribosomal_L31e Ribosomal protein L31e Family
T PF00467 KOW KOW motif Family
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e Domain This family includes prokaryotic L30 and eukaryotic L7. PFAM PF00327
K PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e Domain PFAM PF00238
N PF00861 Ribosomal_L18p Ribosomal L18p/L5e family Family
J PF00572 Ribosomal_L13 Ribosomal protein L13 Family
3 PF00935 Ribosomal_L44 Ribosomal protein L44 Family
V PF00831 Ribosomal_L29 Ribosomal L29 protein Family
C PF00573 Ribosomal_L4 Ribosomal protein L4/L1 family Family
B PF00297 Ribosomal_L3 Ribosomal protein L3 Family
2 PF00832 Ribosomal_L39 Ribosomal L39 protein Family
U PF01246 Ribosomal_L24e Ribosomal protein L24e Family
L PF00828 Ribosomal_L18e Ribosomal protein L18e/L15 Family
Z PF01780 Ribosomal_L37ae Ribosomal L37ae protein family Family
E PF00347 Ribosomal_L6 Ribosomal protein L6 Domain PFAM PF00347
I PF00298 Ribosomal_L11 Ribosomal protein L11, RNA binding domain Domain PFAM PF00298
Q PF01157 Ribosomal_L21e Ribosomal protein L21e Family
A PF00181 Ribosomal_L2 Ribosomal Proteins L2, RNA binding domain Domain PFAM PF00181
P PF01280 Ribosomal_L19e Ribosomal protein L19e Family
D PF00673 Ribosomal_L5_C ribosomal L5P family C-terminus Domain This region is found associated with Pfam:PF00281. PFAM PF00673
Y PF01655 Ribosomal_L32e Ribosomal protein L32 Family
A PF03947 Ribosomal_L2_C Ribosomal Proteins L2, C-terminal domain Domain PFAM PF03947
R PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e Domain This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. PFAM PF00237

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 50S ribosomal protein L2P (3CCV:A)
B 50S ribosomal protein L3P (3CCV:B)
C 50S ribosomal protein L4P (3CCV:C)
D 50S ribosomal protein L5P (3CCV:D)
E 50S ribosomal protein L6P (3CCV:E)
F 50S ribosomal protein L7Ae (3CCV:F)
G 50S ribosomal protein L10E (3CCV:G)
H 50S ribosomal protein L10e (3CCV:H)
I 50S ribosomal protein L11P (3CCV:I)
J 50S ribosomal protein L13P (3CCV:J)
K 50S ribosomal protein L14P (3CCV:K)
L 50S ribosomal protein L15P (3CCV:L)
M 50S ribosomal protein L15e (3CCV:M)
N 50S ribosomal protein L18P (3CCV:N)
O 50S ribosomal protein L18e (3CCV:O)
P 50S ribosomal protein L19e (3CCV:P)
Q 50S ribosomal protein L21e (3CCV:Q)
R 50S ribosomal protein L22P (3CCV:R)
S 50S ribosomal protein L23P (3CCV:S)
T 50S ribosomal protein L24P (3CCV:T)
U 50S ribosomal protein L24e (3CCV:U)
V 50S ribosomal protein L29P (3CCV:V)
W 50S ribosomal protein L30P (3CCV:W)
X 50S ribosomal protein L31e (3CCV:X)
Y 50S ribosomal protein L32e (3CCV:Y)
Z 50S ribosomal protein L37Ae (3CCV:Z)
1 50S ribosomal protein L37e (3CCV:1)
2 50S ribosomal protein L39e (3CCV:2)
3 50S ribosomal protein L44E (3CCV:3)
0 23S RIBOSOMAL RNA (3CCV:0)
  • none
  • none
  • none
9 5S RIBOSOMAL RNA (3CCV:9)
  • none
  • none
  • none