Macromolecule Annotations for the Entities in PDB 3CCU

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
11-56 d3ccu11 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
21-49 d3ccu21 All alpha proteins Non-globular all-alpha subunits of globular proteins Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e Archaeon Haloarcula marismortui [TaxId: 2238]
31-92 d3ccu31 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
B1-337 d3ccub1 All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 Archaeon Haloarcula marismortui [TaxId: 2238]
D10-174 d3ccud1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
F1-119 d3ccuf1 Alpha and beta proteins (a+b) Bacillus chorismate mutase-like L30e-like L30e/L7ae ribosomal proteins Ribosomal protein L7ae Archaeon Haloarcula marismortui [TaxId: 2238]
H4-166 d3ccuh1 Alpha and beta proteins (a+b) alpha/beta-Hammerhead Ribosomal protein L16p/L10e Ribosomal protein L10e Ribosomal protein L10e Archaeon Haloarcula marismortui [TaxId: 2238]
I66-129 d3ccui1 All alpha proteins DNA/RNA-binding 3-helical bundle Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain Archaeon Haloarcula marismortui [TaxId: 2238]
J4-145 d3ccuj1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
K1-132 d3ccuk1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
L1-150 d3ccul1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
N1-186 d3ccun1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
O1-115 d3ccuo1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
P1-143 d3ccup1 All alpha proteins Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Archaeon Haloarcula marismortui [TaxId: 2238]
Q1-95 d3ccuq1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
R1-150 d3ccur1 Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Archaeon Haloarcula marismortui [TaxId: 2238]
S1-81 d3ccus1 Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 Archaeon Haloarcula marismortui [TaxId: 2238]
T1-119 d3ccut1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
U4-56 d3ccuu1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
V1-65 d3ccuv1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
W1-154 d3ccuw1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
X7-88 d3ccux1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
Y95-236 d3ccuy1 Alpha and beta proteins (a/b) Barstar-like Ribosomal protein L32e Ribosomal protein L32e Ribosomal protein L32e Archaeon Haloarcula marismortui [TaxId: 2238]
Z35-106 d3ccuz1 Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37ae Ribosomal protein L37ae Archaeon Haloarcula marismortui [TaxId: 2238]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
1 3ccu100 Mainly Beta Single Sheet N-terminal domain of TfIIb
2 3ccu200 Mainly Alpha Orthogonal Bundle Atp Synthase Epsilon Chain; Chain: I; Ribosomal protein L39e
3 3ccu300 Alpha Beta Roll Nuclear Transport Factor 2; Chain: A,
A1 3ccuA01 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
A2 3ccuA02 Mainly Beta Roll SH3 type barrels.
A3 3ccuA03 Few Secondary Structures Irregular Ribosomal protein L2; domain 3 Ribosomal protein L2, domain 3
B1 3ccuB01 Few Secondary Structures Irregular Ribosomal protein L3; domain 3 Ribosomal protein L3, domain 3
B2 3ccuB02 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3 Translation factors
B3 3ccuB03 Alpha Beta 2-Layer Sandwich Ribosomal Protein L3; Chain: B; domain 2,
C 3ccuC00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L4; Chain: A;
D 3ccuD00 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A,
E1 3ccuE01 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
E2 3ccuE02 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
F 3ccuF00 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A;
H 3ccuH00 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3
I 3ccuI00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A
J 3ccuJ00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A;
K 3ccuK00 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal Protein L14;
L1 3ccuL01 Few Secondary Structures Irregular Molecule: Ribosomal Protein L15; Chain: K; domain 1
L2 3ccuL02 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
M 3ccuM00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal protein L15e Ribosomal protein l15e
N 3ccuN00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
O 3ccuO00 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
P1 3ccuP01 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1
P2 3ccuP02 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces Single Heli x bin
P3 3ccuP03 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
Q 3ccuQ00 Mainly Beta Roll SH3 type barrels. Myosin S1 fragment SH3-like barrel
R 3ccuR00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal Protein L22; Chain A
S 3ccuS00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
T 3ccuT00 Mainly Beta Roll SH3 type barrels.
U 3ccuU00 Mainly Beta Roll Ribosomal Protein L24e; Chain: T;
V 3ccuV00 Mainly Alpha Orthogonal Bundle Helix Hairpins
W1 3ccuW01 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A,
W2 3ccuW02 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3
X 3ccuX00 Alpha Beta Roll Ribosomal Protein L31e; Chain: W;
Z 3ccuZ00 Mainly Beta Single Sheet N-terminal domain of TfIIb

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 50S ribosomal protein L2P (3CCU:A)
B 50S ribosomal protein L3P (3CCU:B)
C 50S ribosomal protein L4P (3CCU:C)
D 50S ribosomal protein L5P (3CCU:D)
E 50S ribosomal protein L6P (3CCU:E)
F 50S ribosomal protein L7Ae (3CCU:F)
G 50S ribosomal protein L10E (3CCU:G)
H 50S ribosomal protein L10e (3CCU:H)
I 50S ribosomal protein L11P (3CCU:I)
J 50S ribosomal protein L13P (3CCU:J)
K 50S ribosomal protein L14P (3CCU:K)
L 50S ribosomal protein L15P (3CCU:L)
  • none
M 50S ribosomal protein L15e (3CCU:M)
N 50S ribosomal protein L18P (3CCU:N)
O 50S ribosomal protein L18e (3CCU:O)
P 50S ribosomal protein L19e (3CCU:P)
Q 50S ribosomal protein L21e (3CCU:Q)
R 50S ribosomal protein L22P (3CCU:R)
S 50S ribosomal protein L23P (3CCU:S)
T 50S ribosomal protein L24P (3CCU:T)
U 50S ribosomal protein L24e (3CCU:U)
  • none
V 50S ribosomal protein L29P (3CCU:V)
W 50S ribosomal protein L30P (3CCU:W)
X 50S ribosomal protein L31e (3CCU:X)
Y 50S ribosomal protein L32e (3CCU:Y)
Z 50S ribosomal protein L37Ae (3CCU:Z)
1 50S ribosomal protein L37e (3CCU:1)
2 50S ribosomal protein L39e (3CCU:2)
3 50S ribosomal protein L44E (3CCU:3)
0 23S RIBOSOMAL RNA (3CCU:0)
  • none
  • none
  • none
9 5S RIBOSOMAL RNA (3CCU:9)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description