Macromolecule Annotations for the Entities in PDB 3CCM

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
11-56 d3ccm11 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
21-49 d3ccm21 All alpha proteins Non-globular all-alpha subunits of globular proteins Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e Archaeon Haloarcula marismortui [TaxId: 2238]
31-92 d3ccm31 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
B1-337 d3ccmb1 All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 Archaeon Haloarcula marismortui [TaxId: 2238]
D10-174 d3ccmd1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
F1-119 d3ccmf1 Alpha and beta proteins (a+b) Bacillus chorismate mutase-like L30e-like L30e/L7ae ribosomal proteins Ribosomal protein L7ae Archaeon Haloarcula marismortui [TaxId: 2238]
H4-166 d3ccmh1 Alpha and beta proteins (a+b) alpha/beta-Hammerhead Ribosomal protein L16p/L10e Ribosomal protein L10e Ribosomal protein L10e Archaeon Haloarcula marismortui [TaxId: 2238]
I66-129 d3ccmi1 All alpha proteins DNA/RNA-binding 3-helical bundle Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain Archaeon Haloarcula marismortui [TaxId: 2238]
J4-145 d3ccmj1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
K1-132 d3ccmk1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
L1-150 d3ccml1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
N1-186 d3ccmn1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
O1-115 d3ccmo1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
P1-143 d3ccmp1 All alpha proteins Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Archaeon Haloarcula marismortui [TaxId: 2238]
Q1-95 d3ccmq1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
R1-150 d3ccmr1 Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Archaeon Haloarcula marismortui [TaxId: 2238]
S1-81 d3ccms1 Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 Archaeon Haloarcula marismortui [TaxId: 2238]
T1-119 d3ccmt1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
U4-56 d3ccmu1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
V1-65 d3ccmv1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
W1-154 d3ccmw1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
X7-88 d3ccmx1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
Y95-236 d3ccmy1 Alpha and beta proteins (a/b) Barstar-like Ribosomal protein L32e Ribosomal protein L32e Ribosomal protein L32e Archaeon Haloarcula marismortui [TaxId: 2238]
Z35-106 d3ccmz1 Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37ae Ribosomal protein L37ae Archaeon Haloarcula marismortui [TaxId: 2238]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
1 3ccm100 Mainly Beta Single Sheet N-terminal domain of TfIIb
2 3ccm200 Mainly Alpha Orthogonal Bundle Atp Synthase Epsilon Chain; Chain: I; Ribosomal protein L39e
3 3ccm300 Alpha Beta Roll Nuclear Transport Factor 2; Chain: A,
A1 3ccmA01 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
A2 3ccmA02 Mainly Beta Roll SH3 type barrels.
A3 3ccmA03 Few Secondary Structures Irregular Ribosomal protein L2; domain 3 Ribosomal protein L2, domain 3
B1 3ccmB01 Few Secondary Structures Irregular Ribosomal protein L3; domain 3 Ribosomal protein L3, domain 3
B2 3ccmB02 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3 Translation factors
B3 3ccmB03 Alpha Beta 2-Layer Sandwich Ribosomal Protein L3; Chain: B; domain 2,
C 3ccmC00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L4; Chain: A;
D 3ccmD00 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A,
E1 3ccmE01 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
E2 3ccmE02 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
F 3ccmF00 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A;
H 3ccmH00 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3
I 3ccmI00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A
J 3ccmJ00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A;
K 3ccmK00 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal Protein L14;
L1 3ccmL01 Few Secondary Structures Irregular Molecule: Ribosomal Protein L15; Chain: K; domain 1
L2 3ccmL02 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
M 3ccmM00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal protein L15e Ribosomal protein l15e
N 3ccmN00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
O 3ccmO00 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
P1 3ccmP01 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1
P2 3ccmP02 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces Single Heli x bin
P3 3ccmP03 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
Q 3ccmQ00 Mainly Beta Roll SH3 type barrels. Myosin S1 fragment SH3-like barrel
R 3ccmR00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal Protein L22; Chain A
S 3ccmS00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
T 3ccmT00 Mainly Beta Roll SH3 type barrels.
U 3ccmU00 Mainly Beta Roll Ribosomal Protein L24e; Chain: T;
V 3ccmV00 Mainly Alpha Orthogonal Bundle Helix Hairpins
W1 3ccmW01 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A,
W2 3ccmW02 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3
X 3ccmX00 Alpha Beta Roll Ribosomal Protein L31e; Chain: W;
Z 3ccmZ00 Mainly Beta Single Sheet N-terminal domain of TfIIb

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 50S ribosomal protein L2P (3CCM:A)
B 50S ribosomal protein L3P (3CCM:B)
C 50S ribosomal protein L4P (3CCM:C)
D 50S ribosomal protein L5P (3CCM:D)
E 50S ribosomal protein L6P (3CCM:E)
F 50S ribosomal protein L7Ae (3CCM:F)
G 50S ribosomal protein L10E (3CCM:G)
H 50S ribosomal protein L10e (3CCM:H)
I 50S ribosomal protein L11P (3CCM:I)
J 50S ribosomal protein L13P (3CCM:J)
K 50S ribosomal protein L14P (3CCM:K)
L 50S ribosomal protein L15P (3CCM:L)
M 50S ribosomal protein L15e (3CCM:M)
N 50S ribosomal protein L18P (3CCM:N)
O 50S ribosomal protein L18e (3CCM:O)
P 50S ribosomal protein L19e (3CCM:P)
Q 50S ribosomal protein L21e (3CCM:Q)
R 50S ribosomal protein L22P (3CCM:R)
S 50S ribosomal protein L23P (3CCM:S)
T 50S ribosomal protein L24P (3CCM:T)
U 50S ribosomal protein L24e (3CCM:U)
V 50S ribosomal protein L29P (3CCM:V)
W 50S ribosomal protein L30P (3CCM:W)
X 50S ribosomal protein L31e (3CCM:X)
Y 50S ribosomal protein L32e (3CCM:Y)
Z 50S ribosomal protein L37Ae (3CCM:Z)
1 50S ribosomal protein L37e (3CCM:1)
2 50S ribosomal protein L39e (3CCM:2)
3 50S ribosomal protein L44E (3CCM:3)
0 23S RIBOSOMAL RNA (3CCM:0)
  • none
  • none
  • none
9 5S RIBOSOMAL RNA (3CCM:9)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description