Macromolecule Annotations for the Entities in PDB 3BRD

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF09271 LAG1-DNAbind LAG1, DNA binding Domain Members of this family are found in various eukaryotic hypothetical proteins and in the DNA-binding protein LAG-1. They adopt a beta sandwich structure, with nine strands in two beta-sheets, in a Greek-key topology, and allow for DNA binding [1]. This domain is also known as RHR-N (Rel-homology region) as it related to Rel domain proteins. PFAM PF09271
A PF09270 BTD Beta-trefoil DNA-binding domain Domain Members of this family of DNA binding domains adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and co-repressors (SMRT/N-Cor and CIR) [1]. PFAM PF09270
A PF01833 TIG IPT/TIG domain Domain This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognise a significant number of members. PFAM PF01833

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
B DNA (5'-D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)- 3') (3BRD:B)
  • none
  • none
  • none
C DNA (5'-D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)- 3') (3BRD:C)
  • none
  • none
  • none
A Lin-12 and glp-1 phenotype protein 1, isoform a (3BRD:A)
D Protein lin-12 (3BRD:D)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description