Macromolecule Annotations for the Entities in PDB 2VUM

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A2-1455 d2vuma1 Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
B20-1224 d2vumb1 Multi-domain proteins (alpha and beta) beta and beta-prime subunits of DNA dependent RNA- polymerase beta and beta-prime subunits of DNA dependent RNA- polymerase RNA-polymerase beta RBP2 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
D4-221 d2vumd1 Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
F72-155 d2vumf1 All alpha proteins RPB6/omega subunit-like RPB6/omega subunit-like RPB6 RPB6 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
G1-171 d2vumg1 Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
H2-146 d2vumh1 All beta proteins OB-fold Nucleic acid-binding proteins RNA polymerase subunit RBP8 RNA polymerase subunit RBP8 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
J1-65 d2vumj1 All alpha proteins DNA/RNA-binding 3-helical bundle RNA polymerase subunit RPB10 RNA polymerase subunit RPB10 RNA polymerase subunit RPB10 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
K1-114 d2vumk1 Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
L25-70 d2vuml1 Small proteins Rubredoxin-like RNA polymerase subunits RBP12 subunit of RNA polymerase II RBP12 subunit of RNA polymerase II Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 (2VUM:A)
B DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 (2VUM:B)
C DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 (2VUM:C)
D DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 (2VUM:D)
E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 (2VUM:E)
F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 (2VUM:F)
G DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 (2VUM:G)
H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 (2VUM:H)
I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 (2VUM:I)
J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 (2VUM:J)
K DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 (2VUM:K)
L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 (2VUM:L)
M AMATOXIN (2VUM:M)
  • none
  • none
  • none
N 5'-D(*AP*AP*AP*CP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)- 3' (2VUM:N)
  • none
  • none
  • none
P 5'-R(*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3' (2VUM:P)
  • none
  • none
  • none
T 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *GP*TP*TP*AP*CP*GP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)- 3' (2VUM:T)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description