Macromolecule Annotations for the Entities in PDB 2QA4

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
11-56 d2qa411 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
21-49 d2qa421 All alpha proteins Non-globular all-alpha subunits of globular proteins Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e Archaeon Haloarcula marismortui [TaxId: 2238]
31-92 d2qa431 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
B1-337 d2qa4b1 All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 Archaeon Haloarcula marismortui [TaxId: 2238]
C1-246 d2qa4c1 Alpha and beta proteins (a/b) Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Archaeon Haloarcula marismortui [TaxId: 2238]
D10-174 d2qa4d1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
F1-119 d2qa4f1 Alpha and beta proteins (a+b) Bacillus chorismate mutase-like L30e-like L30e/L7ae ribosomal proteins Ribosomal protein L7ae Archaeon Haloarcula marismortui [TaxId: 2238]
G12-73 d2qa4g1 Peptides Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Archaeon Haloarcula marismortui [TaxId: 2238]
H1-163 d2qa4h1 Alpha and beta proteins (a+b) alpha/beta-Hammerhead Ribosomal protein L16p/L10e Ribosomal protein L10e Ribosomal protein L10e Archaeon Haloarcula marismortui [TaxId: 2238]
I67-130 d2qa4i1 All alpha proteins DNA/RNA-binding 3-helical bundle Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain Archaeon Haloarcula marismortui [TaxId: 2238]
J4-145 d2qa4j1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
K1-132 d2qa4k1 All beta proteins Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Archaeon Haloarcula marismortui [TaxId: 2238]
L1-150 d2qa4l1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
M1-194 d2qa4m1 Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L15e Ribosomal protein L15e Archaeon Haloarcula marismortui [TaxId: 2238]
N1-186 d2qa4n1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
O1-115 d2qa4o1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
P1-143 d2qa4p1 All alpha proteins Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Archaeon Haloarcula marismortui [TaxId: 2238]
Q1-95 d2qa4q1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
R1-150 d2qa4r1 Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Archaeon Haloarcula marismortui [TaxId: 2238]
S1-81 d2qa4s1 Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 Archaeon Haloarcula marismortui [TaxId: 2238]
T1-119 d2qa4t1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
U4-56 d2qa4u1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
V1-65 d2qa4v1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
W1-154 d2qa4w1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
X7-88 d2qa4x1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Archaeon Haloarcula marismortui [TaxId: 2238]
Y95-236 d2qa4y1 Alpha and beta proteins (a/b) Barstar-like Ribosomal protein L32e Ribosomal protein L32e Ribosomal protein L32e Archaeon Haloarcula marismortui [TaxId: 2238]
Z10-82 d2qa4z1 Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37ae Ribosomal protein L37ae Archaeon Haloarcula marismortui [TaxId: 2238]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
1 2qa4100 Mainly Beta Single Sheet N-terminal domain of TfIIb
2 2qa4200 Mainly Alpha Orthogonal Bundle Atp Synthase Epsilon Chain; Chain: I; Ribosomal protein L39e
3 2qa4300 Alpha Beta Roll Nuclear Transport Factor 2; Chain: A,
A1 2qa4A01 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
A2 2qa4A02 Mainly Beta Roll SH3 type barrels.
A3 2qa4A03 Few Secondary Structures Irregular Ribosomal protein L2; domain 3 Ribosomal protein L2, domain 3
B1 2qa4B01 Few Secondary Structures Irregular Ribosomal protein L3; domain 3 Ribosomal protein L3, domain 3
B2 2qa4B02 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3 Translation factors
B3 2qa4B03 Alpha Beta 2-Layer Sandwich Ribosomal Protein L3; Chain: B; domain 2,
C 2qa4C00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L4; Chain: A;
D 2qa4D00 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A,
E1 2qa4E01 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
E2 2qa4E02 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
F 2qa4F00 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A;
H 2qa4H00 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3
I2 2qa4I02 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A
J 2qa4J00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A;
K 2qa4K00 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal Protein L14;
L1 2qa4L01 Few Secondary Structures Irregular Molecule: Ribosomal Protein L15; Chain: K; domain 1
L2 2qa4L02 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
M 2qa4M00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal protein L15e Ribosomal protein l15e
N 2qa4N00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
O 2qa4O00 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
P1 2qa4P01 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1
P2 2qa4P02 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces Single Heli x bin
P3 2qa4P03 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
Q 2qa4Q00 Mainly Beta Roll SH3 type barrels. Myosin S1 fragment SH3-like barrel
R 2qa4R00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal Protein L22; Chain A
S 2qa4S00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
T 2qa4T00 Mainly Beta Roll SH3 type barrels.
U 2qa4U00 Mainly Beta Roll Ribosomal Protein L24e; Chain: T;
V 2qa4V00 Mainly Alpha Orthogonal Bundle Helix Hairpins
W1 2qa4W01 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A,
W2 2qa4W02 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3
X 2qa4X00 Alpha Beta Roll Ribosomal Protein L31e; Chain: W;
Z 2qa4Z00 Mainly Beta Single Sheet N-terminal domain of TfIIb

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
0 23S RIBOSOMAL RNA (2QA4:0)
  • none
  • none
  • none
9 5S RIBOSOMAL RNA (2QA4:9)
  • none
  • none
  • none
A 50S ribosomal protein L2P (2QA4:A)
B 50S ribosomal protein L3P (2QA4:B)
C 50S ribosomal protein L4P (2QA4:C)
D 50S ribosomal protein L5P (2QA4:D)
E 50S ribosomal protein L6P (2QA4:E)
F 50S ribosomal protein L7Ae (2QA4:F)
G ACIDIC RIBOSOMAL PROTEIN P0 HOMO (2QA4:G)
H 50S ribosomal protein L10e (2QA4:H)
I 50S ribosomal protein L11P (2QA4:I)
J 50S ribosomal protein L13P (2QA4:J)
K 50S ribosomal protein L14P (2QA4:K)
L 50S ribosomal protein L15P (2QA4:L)
M 50S ribosomal protein L15e (2QA4:M)
N 50S ribosomal protein L18P (2QA4:N)
O 50S ribosomal protein L18e (2QA4:O)
P 50S ribosomal protein L19e (2QA4:P)
Q 50S ribosomal protein L21e (2QA4:Q)
R 50S ribosomal protein L22P (2QA4:R)
S 50S ribosomal protein L23P (2QA4:S)
T 50S ribosomal protein L24P (2QA4:T)
U 50S ribosomal protein L24e (2QA4:U)
V 50S ribosomal protein L29P (2QA4:V)
W 50S ribosomal protein L30P (2QA4:W)
X 50S RIBOSOMAL PROTEIN L31E (2QA4:X)
Y 50S ribosomal protein L32e (2QA4:Y)
Z 50S ribosomal protein L37Ae (2QA4:Z)
1 50S ribosomal protein L37e (2QA4:1)
2 50S ribosomal protein L39e (2QA4:2)
3 50S ribosomal protein L44E (2QA4:3)

Protein Modification Annotation

Type PDB Residue Nr. Description