Macromolecule Annotations for the Entities in PDB 2NY7

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
H1-113 d2ny7h1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Human (Homo sapiens), cluster 1 [TaxId: 9606]
H114-230 d2ny7h2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Human (Homo sapiens) [TaxId: 9606]
L1-107 d2ny7l1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Human (Homo sapiens), cluster 3.1 [TaxId: 9606]
L108-214 d2ny7l2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Human (Homo sapiens) [TaxId: 9606]
G83-491 d2ny7g1 Alpha and beta proteins (a+b) gp120 core gp120 core gp120 core gp120 core Human immunodeficiency virus type 1 [TaxId: 11676]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
G 2ny7G00 Mainly Beta Beta Complex HIV Envelope Protein Gp120; Chain G HIV Envelope Protein Gp120; Chain G
H1 2ny7H01 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
H2 2ny7H02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
L1 2ny7L01 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
L2 2ny7L02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
G ENVELOPE GLYCOPROTEIN GP120 (2NY7:G)
  • none
  • none
H ANTIBODY b12, HEAVY CHAIN (2NY7:H)
  • none
  • none
  • none
L ANTIBODY b12, LIGHT CHAIN (2NY7:L)

Protein Modification Annotation

Type PDB Residue Nr. Description