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139555
Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
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Structure Summary
3D View
Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
2NY7
HIV-1 gp120 Envelope Glycoprotein Complexed with the Broadly Neutralizing CD4-Binding-Site Antibody b12
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
Download Files
FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)
Biological Assembly 1 (gz) (A+S)
Biological Assembly 2 (gz) (S)
Biological Assembly 3 (gz) (S)
Biological Assembly 4 (gz) (S)
Biological Assembly 5 (gz) (S)
Macromolecule Annotations for the Entities in PDB 2NY7
Domain Annotation: SCOP Classification
SCOP Database (version: 1.75) Homepage
Chains
Domain Info
Class
Fold
Superfamily
Family
Domain
Species
H1-113
d2ny7h1
All beta proteins
Immunoglobulin-like beta-sandwich
Immunoglobulin
V set domains (antibody variable domain-like)
Immunoglobulin heavy chain variable domain, VH
Human (Homo sapiens), cluster 1 [TaxId: 9606]
H114-230
d2ny7h2
All beta proteins
Immunoglobulin-like beta-sandwich
Immunoglobulin
C1 set domains (antibody constant domain- like)
Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma
Human (Homo sapiens) [TaxId: 9606]
L1-107
d2ny7l1
All beta proteins
Immunoglobulin-like beta-sandwich
Immunoglobulin
V set domains (antibody variable domain-like)
Immunoglobulin light chain kappa variable domain, VL- kappa
Human (Homo sapiens), cluster 3.1 [TaxId: 9606]
L108-214
d2ny7l2
All beta proteins
Immunoglobulin-like beta-sandwich
Immunoglobulin
C1 set domains (antibody constant domain- like)
Immunoglobulin light chain kappa constant domain, CL- kappa
Human (Homo sapiens) [TaxId: 9606]
G83-491
d2ny7g1
Alpha and beta proteins (a+b)
gp120 core
gp120 core
gp120 core
gp120 core
Human immunodeficiency virus type 1 [TaxId: 11676]
Domain Annotation: CATH
CATH Database (version 4.0.0) Homepage
Chains
Domain
Class
Architecture
Topology
Homology
G
2ny7G00
Mainly Beta
Beta Complex
HIV Envelope Protein Gp120; Chain G
HIV Envelope Protein Gp120; Chain G
H1
2ny7H01
Mainly Beta
Sandwich
Immunoglobulin-like
Immunoglobulins
H2
2ny7H02
Mainly Beta
Sandwich
Immunoglobulin-like
Immunoglobulins
L1
2ny7L01
Mainly Beta
Sandwich
Immunoglobulin-like
Immunoglobulins
L2
2ny7L02
Mainly Beta
Sandwich
Immunoglobulin-like
Immunoglobulins
Protein Family Annotation
Pfam Database Homepage
Chains
Pfam Accession
Pfam Identifier
Pfam Description
Type
Source
Gene Product Annotation
Gene Ontology Consortium Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
G
ENVELOPE GLYCOPROTEIN GP120 (2NY7:G)
none
none
Viral Envelope
H
ANTIBODY b12, HEAVY CHAIN (2NY7:H)
none
none
none
L
ANTIBODY b12, LIGHT CHAIN (2NY7:L)
Antigen Binding
Serine Type Endopeptidase Activity
Protein Binding
Immunoglobulin Receptor Binding
Retina Homeostasis
Adaptive Immune Response
Immune System Process
Proteolysis
Receptor Mediated Endocytosis
Phagocytosis Recognition
Phagocytosis Engulfment
Immune Response
Complement Activation
Complement Activation Classical Pathway
Regulation of Complement Activation
Fc Epsilon Receptor Signaling Pathway
Fc Gamma Receptor Signaling Pathway Involved in Phagocytosis
Defense Response to Bacterium
Innate Immune Response
Regulation of Immune Response
B Cell Receptor Signaling Pathway
Positive Regulation of B Cell Activation
Leukocyte Migration
Extracellular Region
Extracellular Space
Plasma Membrane
External Side of Plasma Membrane
Membrane
Immunoglobulin Complex Circulating
Extracellular Exosome
Blood Microparticle
Protein Modification Annotation
Type
PDB Residue Nr.
Description