Macromolecule Annotations for the Entities in PDB 2JE6

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A1-191 d2je6a1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
A192-275 d2je6a2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
B8-155 d2je6b1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
B156-241 d2je6b2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
I66-152 d2je6i1 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like S1-domain of exosome complex RNA-binding protein 1, ECR1 Sulfolobus solfataricus [TaxId: 2287]
I7-65 d2je6i2 All beta proteins Barrel-sandwich hybrid Ribosomal L27 protein-like ECR1 N-terminal domain-like Exosome complex RNA-binding protein 1, ECR1 Sulfolobus solfataricus [TaxId: 2287]
I153-221 d2je6i3 Alpha and beta proteins (a+b) Eukaryotic type KH-domain (KH-domain type I) Eukaryotic type KH-domain (KH-domain type I) Eukaryotic type KH-domain (KH-domain type I) Exosome complex RNA-binding protein 1, ECR1 Sulfolobus solfataricus [TaxId: 2287]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
I PF00013 KH_1 KH domain Domain KH motifs bind RNA in vitro. Autoantibodies to Nova, a KH domain protein, cause paraneoplastic opsoclonus ataxia. PFAM PF00013
A PF03725 RNase_PH_C 3' exoribonuclease family, domain 2 Domain This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria. PFAM PF03725
A PF01138 RNase_PH 3' exoribonuclease family, domain 1 Domain This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria. PFAM PF01138
B PF01138 RNase_PH 3' exoribonuclease family, domain 1 Domain This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria. PFAM PF01138
B PF03725 RNase_PH_C 3' exoribonuclease family, domain 2 Domain This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria. PFAM PF03725

Protein Modification Annotation

Type PDB Residue Nr. Description