Macromolecule Annotations for the Entities in PDB 2I5Y

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
G86-492 d2i5yg1 Alpha and beta proteins (a+b) gp120 core gp120 core gp120 core gp120 core Human immunodeficiency virus type 1 [TaxId: 11676]
H1-113 d2i5yh1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Human (Homo sapiens), cluster 1 [TaxId: 9606]
H114-214 d2i5yh2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Human (Homo sapiens) [TaxId: 9606]
L1-107 d2i5yl1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
L108-212 d2i5yl2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Human (Homo sapiens) [TaxId: 9606]
P86-492 d2i5yp1 Alpha and beta proteins (a+b) gp120 core gp120 core gp120 core gp120 core Human immunodeficiency virus type 1 [TaxId: 11676]
Q1-107 d2i5yq1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Q108-212 d2i5yq2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Human (Homo sapiens) [TaxId: 9606]
R1-113 d2i5yr1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Human (Homo sapiens), cluster 1 [TaxId: 9606]
R114-214 d2i5yr2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Human (Homo sapiens) [TaxId: 9606]
M2-27 d2i5ym1 Designed proteins Scorpion toxin-based designs Scorpion toxin-based designs Mini-protein reproducing the core of the CD4 surface Mini-protein reproducing the core of the CD4 surface Synthetic
S2-27 d2i5ys1 Designed proteins Scorpion toxin-based designs Scorpion toxin-based designs Mini-protein reproducing the core of the CD4 surface Mini-protein reproducing the core of the CD4 surface Synthetic

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
G,P Exterior membrane glycoprotein(GP120) (2I5Y:G,P)
  • none
  • none
L,Q Antibody 17B Light chain (2I5Y:L,Q)
  • none
  • none
  • none
H,R Antibody 17B Heavy chain (2I5Y:H,R)
  • none
  • none
  • none
M,S CD4M47, SCORPION-TOXIN MIMIC OF CD4 (2I5Y:M,S)
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description