Macromolecule Annotations for the Entities in PDB 2C39

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A1-191 d2c39a1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
A192-275 d2c39a2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
B8-155 d2c39b1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
B156-248 d2c39b2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
C1-191 d2c39c1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
C192-275 d2c39c2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
D8-155 d2c39d1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
D156-248 d2c39d2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
E1-191 d2c39e1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
E192-275 d2c39e2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
F8-155 d2c39f1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
F156-248 d2c39f2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
G1-191 d2c39g1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
G192-275 d2c39g2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
I1-191 d2c39i1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
I192-275 d2c39i2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
J8-155 d2c39j1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
J156-248 d2c39j2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
K1-191 d2c39k1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
K192-275 d2c39k2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
L8-155 d2c39l1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
L156-248 d2c39l2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
M1-191 d2c39m1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
M192-275 d2c39m2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
N10-155 d2c39n1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
N156-248 d2c39n2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
O1-191 d2c39o1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
O192-275 d2c39o2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
P8-155 d2c39p1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
P156-248 d2c39p2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
Q1-191 d2c39q1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
Q192-275 d2c39q2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
R8-155 d2c39r1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
R156-248 d2c39r2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
S1-191 d2c39s1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
S192-274 d2c39s2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
T8-155 d2c39t1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
T156-248 d2c39t2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
U1-191 d2c39u1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
U192-274 d2c39u2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
V9-155 d2c39v1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
V156-247 d2c39v2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
W1-191 d2c39w1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
W192-275 d2c39w2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
X8-155 d2c39x1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
X156-248 d2c39x2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A1 2c39A01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
B1 2c39B01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
C1 2c39C01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
D1 2c39D01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
E1 2c39E01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
F1 2c39F01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
G1 2c39G01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
H1 2c39H01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
I1 2c39I01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
J1 2c39J01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
K1 2c39K01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
L1 2c39L01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
M1 2c39M01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
N1 2c39N01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
O1 2c39O01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
P1 2c39P01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
Q1 2c39Q01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
R1 2c39R01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
S1 2c39S01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
T1 2c39T01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
U1 2c39U01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
V1 2c39V01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
W1 2c39W01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
X1 2c39X01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
B PF01138 RNase_PH 3' exoribonuclease family, domain 1 Domain This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria. PFAM PF01138
A PF03725 RNase_PH_C 3' exoribonuclease family, domain 2 Domain This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria. PFAM PF03725
A PF01138 RNase_PH 3' exoribonuclease family, domain 1 Domain This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria. PFAM PF01138
B PF03725 RNase_PH_C 3' exoribonuclease family, domain 2 Domain This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria. PFAM PF03725