Macromolecule Annotations for the Entities in PDB 2C39

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A1-191 d2c39a1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
A192-275 d2c39a2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
B8-155 d2c39b1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
B156-248 d2c39b2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
C1-191 d2c39c1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
C192-275 d2c39c2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
D8-155 d2c39d1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
D156-248 d2c39d2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
E1-191 d2c39e1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
E192-275 d2c39e2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
F8-155 d2c39f1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
F156-248 d2c39f2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
G1-191 d2c39g1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
G192-275 d2c39g2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
I1-191 d2c39i1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
I192-275 d2c39i2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
J8-155 d2c39j1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
J156-248 d2c39j2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
K1-191 d2c39k1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
K192-275 d2c39k2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
L8-155 d2c39l1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
L156-248 d2c39l2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
M1-191 d2c39m1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
M192-275 d2c39m2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
N10-155 d2c39n1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
N156-248 d2c39n2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
O1-191 d2c39o1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
O192-275 d2c39o2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
P8-155 d2c39p1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
P156-248 d2c39p2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
Q1-191 d2c39q1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
Q192-275 d2c39q2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
R8-155 d2c39r1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
R156-248 d2c39r2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
S1-191 d2c39s1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
S192-274 d2c39s2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
T8-155 d2c39t1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
T156-248 d2c39t2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
U1-191 d2c39u1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
U192-274 d2c39u2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
V9-155 d2c39v1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
V156-247 d2c39v2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
W1-191 d2c39w1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
W192-275 d2c39w2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
X8-155 d2c39x1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
X156-248 d2c39x2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A1 2c39A01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
B1 2c39B01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
C1 2c39C01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
D1 2c39D01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
E1 2c39E01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
F1 2c39F01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
G1 2c39G01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
H1 2c39H01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
I1 2c39I01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
J1 2c39J01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
K1 2c39K01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
L1 2c39L01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
M1 2c39M01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
N1 2c39N01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
O1 2c39O01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
P1 2c39P01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
Q1 2c39Q01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
R1 2c39R01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
S1 2c39S01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
T1 2c39T01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
U1 2c39U01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
V1 2c39V01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
W1 2c39W01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
X1 2c39X01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF01138 RNase_PH 3' exoribonuclease family, domain 1 Domain This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria. PFAM PF01138
B PF03725 RNase_PH_C 3' exoribonuclease family, domain 2 Domain This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria. PFAM PF03725
A PF03725 RNase_PH_C 3' exoribonuclease family, domain 2 Domain This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria. PFAM PF03725
B PF01138 RNase_PH 3' exoribonuclease family, domain 1 Domain This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria. PFAM PF01138

Protein Modification Annotation

Type PDB Residue Nr. Description