Macromolecule Annotations for the Entities in PDB 2C38

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A1-191 d2c38a1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
A192-275 d2c38a2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
B8-155 d2c38b1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
B156-248 d2c38b2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
C1-191 d2c38c1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
C192-275 d2c38c2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
D8-155 d2c38d1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
D156-248 d2c38d2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
E1-191 d2c38e1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
E192-275 d2c38e2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
F8-155 d2c38f1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
F156-248 d2c38f2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
G1-191 d2c38g1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
G192-275 d2c38g2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
H8-155 d2c38h1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
H156-248 d2c38h2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
I1-191 d2c38i1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
I192-275 d2c38i2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
J8-155 d2c38j1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
J156-248 d2c38j2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
K1-191 d2c38k1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
K192-275 d2c38k2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
L8-155 d2c38l1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
L156-248 d2c38l2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
M1-191 d2c38m1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
M192-275 d2c38m2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
N8-155 d2c38n1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
N156-248 d2c38n2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
O1-191 d2c38o1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
O192-275 d2c38o2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
P8-155 d2c38p1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
P156-248 d2c38p2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
Q1-191 d2c38q1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
Q192-275 d2c38q2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
R8-155 d2c38r1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
R156-248 d2c38r2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
S1-191 d2c38s1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
S192-275 d2c38s2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
T8-155 d2c38t1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
T156-248 d2c38t2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
U1-191 d2c38u1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
U192-274 d2c38u2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
V9-155 d2c38v1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
V156-247 d2c38v2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
W1-191 d2c38w1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 2,ECX2 Sulfolobus solfataricus [TaxId: 2287]
W192-275 d2c38w2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 2, ECX2 Sulfolobus solfataricus [TaxId: 2287]
X8-155 d2c38x1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]
X156-248 d2c38x2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Exosome complex exonuclease 1, ECX1 Sulfolobus solfataricus [TaxId: 2287]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A1 2c38A01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
B1 2c38B01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
C1 2c38C01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
D1 2c38D01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
E1 2c38E01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
F1 2c38F01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
G1 2c38G01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
H1 2c38H01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
I1 2c38I01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
J1 2c38J01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
K1 2c38K01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
L1 2c38L01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
M1 2c38M01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
N1 2c38N01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
O1 2c38O01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
P1 2c38P01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
Q1 2c38Q01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
R1 2c38R01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
S1 2c38S01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
T1 2c38T01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
U1 2c38U01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
V1 2c38V01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
W1 2c38W01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain
X1 2c38X01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 GHMP Kinase, N-terminal domain

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF03725 RNase_PH_C 3' exoribonuclease family, domain 2 Domain This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria. PFAM PF03725
B PF01138 RNase_PH 3' exoribonuclease family, domain 1 Domain This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria. PFAM PF01138
A PF01138 RNase_PH 3' exoribonuclease family, domain 1 Domain This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria. PFAM PF01138
B PF03725 RNase_PH_C 3' exoribonuclease family, domain 2 Domain This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria. PFAM PF03725

Protein Modification Annotation

Type PDB Residue Nr. Description