Macromolecule Annotations for the Entities in PDB 2B8K

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A2-1450 d2b8ka1 Multi-domain proteins (alpha and beta) beta and beta-prime subunits of DNA dependent RNA- polymerase beta and beta-prime subunits of DNA dependent RNA- polymerase RNA-polymerase beta-prime RBP1 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
B20-1224 d2b8kb1 Multi-domain proteins (alpha and beta) beta and beta-prime subunits of DNA dependent RNA- polymerase beta and beta-prime subunits of DNA dependent RNA- polymerase RNA-polymerase beta RBP2 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
C3-37,C173-268 d2b8kc1 Alpha and beta proteins (a+b) DCoH-like RBP11-like subunits of RNA polymerase RNA polymerase alpha subunit dimerisation domain RPB3 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
C42-172 d2b8kc2 Alpha and beta proteins (a+b) Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit RPB3 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
D15-75 d2b8kd1 Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
E2-143 d2b8ke1 Alpha and beta proteins (a/b) Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
E144-215 d2b8ke2 Alpha and beta proteins (a+b) RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5 Eukaryotic RPB5 C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
F72-155 d2b8kf1 All alpha proteins RPB6/omega subunit-like RPB6/omega subunit-like RPB6 RPB6 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
G81-171 d2b8kg1 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
G1-80 d2b8kg2 Alpha and beta proteins (a+b) Dodecin subunit-like N-terminal, heterodimerisation domain of RBP7 (RpoE) N-terminal, heterodimerisation domain of RBP7 (RpoE) N-terminal, heterodimerisation domain of RBP7 (RpoE) Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
H2-146 d2b8kh1 All beta proteins OB-fold Nucleic acid-binding proteins RNA polymerase subunit RBP8 RNA polymerase subunit RBP8 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
I2-49 d2b8ki1 Small proteins Rubredoxin-like Zinc beta-ribbon Transcriptional factor domain RBP9 subunit of RNA polymerase II Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
I50-120 d2b8ki2 Small proteins Rubredoxin-like Zinc beta-ribbon Transcriptional factor domain RBP9 subunit of RNA polymerase II Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
J1-65 d2b8kj1 All alpha proteins DNA/RNA-binding 3-helical bundle RNA polymerase subunit RPB10 RNA polymerase subunit RPB10 RNA polymerase subunit RPB10 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
K1-114 d2b8kk1 Alpha and beta proteins (a+b) DCoH-like RBP11-like subunits of RNA polymerase RBP11/RpoL RPB11 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
L25-70 d2b8kl1 Small proteins Rubredoxin-like RNA polymerase subunits RBP12 subunit of RNA polymerase II RBP12 subunit of RNA polymerase II Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A DNA-directed RNA polymerase II largest subunit (2B8K:A)
B DNA-directed RNA polymerase II 140 kDa polypeptide (2B8K:B)
C DNA-directed RNA polymerase II 45 kDa polypeptide (2B8K:C)
D DNA-directed RNA polymerase II 32 kDa polypeptide (2B8K:D)
E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide (2B8K:E)
F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide (2B8K:F)
G DNA-directed RNA polymerase II 19 kDa polypeptide (2B8K:G)
H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide (2B8K:H)
I DNA-directed RNA polymerase II subunit 9 (2B8K:I)
J DNA-directed RNA polymerases I/II/III subunit 10 (2B8K:J)
K DNA-directed RNA polymerase II 13.6 kDa polypeptide (2B8K:K)
L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide (2B8K:L)

Protein Modification Annotation

Type PDB Residue Nr. Description