Macromolecule Annotations for the Entities in PDB 1YYM

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
G86-492 d1yymg1 Alpha and beta proteins (a+b) gp120 core gp120 core gp120 core gp120 core Human immunodeficiency virus type 1 [TaxId: 11676]
H1-113 d1yymh1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Human (Homo sapiens), cluster 1 [TaxId: 9606]
H114-214 d1yymh2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Human (Homo sapiens) [TaxId: 9606]
L1-107 d1yyml1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
L108-212 d1yyml2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Human (Homo sapiens) [TaxId: 9606]
P1086-1492 d1yymp1 Alpha and beta proteins (a+b) gp120 core gp120 core gp120 core gp120 core Human immunodeficiency virus type 1 [TaxId: 11676]
Q1001-1107 d1yymq1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Q1108-1212 d1yymq2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Human (Homo sapiens) [TaxId: 9606]
R1001-1113 d1yymr1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Human (Homo sapiens), cluster 1 [TaxId: 9606]
R1114-1214 d1yymr2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Human (Homo sapiens) [TaxId: 9606]
M2-27 d1yymm1 Designed proteins Scorpion toxin-based designs Scorpion toxin-based designs Mini-protein reproducing the core of the CD4 surface Mini-protein reproducing the core of the CD4 surface Synthetic
S1002-1027 d1yyms1 Designed proteins Scorpion toxin-based designs Scorpion toxin-based designs Mini-protein reproducing the core of the CD4 surface Mini-protein reproducing the core of the CD4 surface Synthetic

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
L PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
L PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
H PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
G PF00516 GP120 Envelope glycoprotein GP120 Family
G PF00516 GP120 Envelope glycoprotein GP120 Family
G PF00516 GP120 Envelope glycoprotein GP120 Family
H PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
G,P Exterior membrane glycoprotein(GP120) (1YYM:G,P)
  • none
  • none
L,Q antibody 17b light chain (1YYM:L,Q)
  • none
  • none
  • none
H,R antibody 17b heavy chain (1YYM:H,R)
  • none
  • none
  • none
M,S F23, scorpion-toxin mimic of CD4 (1YYM:M,S)
  • none
  • none
  • none