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139717
Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
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Structure Summary
3D View
Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
1Y1Y
RNA Polymerase II-TFIIS-DNA/RNA complex
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
Download Files
FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)
Biological Assembly (gz) (A)
Macromolecule Annotations for the Entities in PDB 1Y1Y
Domain Annotation: SCOP Classification
SCOP Database (version: 1.75) Homepage
Chains
Domain Info
Class
Fold
Superfamily
Family
Domain
Species
A
d1y1ya_
Low resolution protein structures
RNA polymerase
RNA polymerase
RNA polymerase
Complete 12-subunit RNA polymerase II complex
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
B
d1y1yb_
Low resolution protein structures
RNA polymerase
RNA polymerase
RNA polymerase
Complete 12-subunit RNA polymerase II complex
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
C
d1y1yc_
Low resolution protein structures
RNA polymerase
RNA polymerase
RNA polymerase
Complete 12-subunit RNA polymerase II complex
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
D
d1y1yd_
Low resolution protein structures
RNA polymerase
RNA polymerase
RNA polymerase
Complete 12-subunit RNA polymerase II complex
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
E
d1y1ye_
Low resolution protein structures
RNA polymerase
RNA polymerase
RNA polymerase
Complete 12-subunit RNA polymerase II complex
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
F
d1y1yf_
Low resolution protein structures
RNA polymerase
RNA polymerase
RNA polymerase
Complete 12-subunit RNA polymerase II complex
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
G
d1y1yg_
Low resolution protein structures
RNA polymerase
RNA polymerase
RNA polymerase
Complete 12-subunit RNA polymerase II complex
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
H
d1y1yh_
Low resolution protein structures
RNA polymerase
RNA polymerase
RNA polymerase
Complete 12-subunit RNA polymerase II complex
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
I
d1y1yi_
Low resolution protein structures
RNA polymerase
RNA polymerase
RNA polymerase
Complete 12-subunit RNA polymerase II complex
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
J
d1y1yj_
Low resolution protein structures
RNA polymerase
RNA polymerase
RNA polymerase
Complete 12-subunit RNA polymerase II complex
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
K
d1y1yk_
Low resolution protein structures
RNA polymerase
RNA polymerase
RNA polymerase
Complete 12-subunit RNA polymerase II complex
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
L
d1y1yl_
Low resolution protein structures
RNA polymerase
RNA polymerase
RNA polymerase
Complete 12-subunit RNA polymerase II complex
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
S
d1y1ys_
Low resolution protein structures
RNA polymerase
RNA polymerase
RNA polymerase
Complete 12-subunit RNA polymerase II complex
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Protein Family Annotation
Pfam Database Homepage
Chains
Pfam Accession
Pfam Identifier
Pfam Description
Type
Source
Gene Product Annotation
Gene Ontology Consortium Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
T
5'-D(P*TP*AP*CP*GP*CP*CP*T)-3' (1Y1Y:T)
none
none
none
P
5'-R(P*AP*GP*GP*C)-3' (1Y1Y:P)
none
none
none
A
DNA-directed RNA polymerase II largest subunit (1Y1Y:A)
RNA Polymerase Ii Activity
DNA Binding
DNA Directed 5' 3' RNA Polymerase Activity
RNA Directed 5' 3' RNA Polymerase Activity
Protein Binding
Transferase Activity
Nucleotidyltransferase Activity
Metal Ion Binding
Transcription RNA Templated
Transcription DNA Templated
Transcription by RNA Polymerase Ii
Translesion Synthesis
Nucleus
DNA Directed RNA Polymerase Ii Core Complex
Cytoplasmic Stress Granule
B
DNA-directed RNA polymerase II 140 kDa polypeptide (1Y1Y:B)
RNA Polymerase Ii Activity
DNA Binding
DNA Directed 5' 3' RNA Polymerase Activity
RNA Directed 5' 3' RNA Polymerase Activity
Protein Binding
Transferase Activity
Nucleotidyltransferase Activity
Ribonucleoside Binding
Metal Ion Binding
Transcription RNA Templated
Transcription DNA Templated
Transcription by RNA Polymerase Ii
Nucleus
DNA Directed RNA Polymerase Ii Core Complex
Cytoplasmic Stress Granule
C
DNA-directed RNA polymerase II 45 kDa polypeptide (1Y1Y:C)
RNA Polymerase Ii Activity
DNA Binding
DNA Directed 5' 3' RNA Polymerase Activity
RNA Directed 5' 3' RNA Polymerase Activity
Protein Binding
Metal Ion Binding
Protein Dimerization Activity
Transcription RNA Templated
Transcription DNA Templated
Transcription by RNA Polymerase Ii
Termination of RNA Polymerase Ii Transcription
Nucleus
Nucleoplasm
DNA Directed RNA Polymerase Ii Core Complex
D
DNA-directed RNA polymerase II 32 kDa polypeptide (1Y1Y:D)
Nucleotide Binding
Single Stranded DNA Binding
Single Stranded RNA Binding
Catalytic Activity
DNA Directed 5' 3' RNA Polymerase Activity
RNA Directed 5' 3' RNA Polymerase Activity
Protein Binding
Translation Initiation Factor Binding
Nuclear Transcribed MRNA Catabolic Process Deadenylation Dependent Decay
Transcription RNA Templated
Transcription DNA Templated
Transcription by RNA Polymerase Ii
Transcription Initiation From RNA Polymerase Ii Promoter
MRNA Processing
MRNA Export From Nucleus in Response to Heat Stress
Recruitment of 3' End Processing Factors to RNA Polymerase Ii Holoenzyme Complex
Cellular Metabolic Process
Positive Regulation of Translational Initiation
P Body
Nucleus
DNA Directed RNA Polymerase Ii Core Complex
Cytoplasm
E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide (1Y1Y:E)
RNA Polymerase I Activity
RNA Polymerase Ii Activity
RNA Polymerase Iii Activity
DNA Binding
DNA Directed 5' 3' RNA Polymerase Activity
RNA Directed 5' 3' RNA Polymerase Activity
Protein Binding
Transcription RNA Templated
Transcription DNA Templated
Transcription by RNA Polymerase I
Transcription by RNA Polymerase Ii
Transcription by RNA Polymerase Iii
Termination of RNA Polymerase Iii Transcription
Ribosome Biogenesis
TRNA Transcription by RNA Polymerase Iii
Nucleus
Nucleoplasm
DNA Directed RNA Polymerase Ii Core Complex
DNA Directed RNA Polymerase Iii Complex
DNA Directed RNA Polymerase I Complex
F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide (1Y1Y:F)
RNA Polymerase I Activity
RNA Polymerase Ii Activity
RNA Polymerase Iii Activity
DNA Binding
DNA Directed 5' 3' RNA Polymerase Activity
RNA Directed 5' 3' RNA Polymerase Activity
Protein Binding
Transcription RNA Templated
Transcription DNA Templated
Transcription by RNA Polymerase I
Transcription by RNA Polymerase Ii
Transcription by RNA Polymerase Iii
Termination of RNA Polymerase Iii Transcription
Ribosome Biogenesis
TRNA Transcription by RNA Polymerase Iii
Nucleus
Nucleoplasm
DNA Directed RNA Polymerase Ii Core Complex
DNA Directed RNA Polymerase Iii Complex
DNA Directed RNA Polymerase I Complex
Cytoplasm
G
DNA-directed RNA polymerase II 19 kDa polypeptide (1Y1Y:G)
Nucleic Acid Binding
Single Stranded DNA Binding
Single Stranded RNA Binding
DNA Directed 5' 3' RNA Polymerase Activity
RNA Directed 5' 3' RNA Polymerase Activity
Protein Binding
Translation Initiation Factor Binding
Nuclear Transcribed MRNA Catabolic Process Exonucleolytic
Transcription RNA Templated
Transcription DNA Templated
Transcription by RNA Polymerase Ii
Transcription Initiation From RNA Polymerase Ii Promoter
Positive Regulation of Translational Initiation
Positive Regulation of Nuclear Transcribed MRNA Poly(a) Tail Shortening
P Body
Nucleus
DNA Directed RNA Polymerase Ii Core Complex
Cytoplasm
H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide (1Y1Y:H)
RNA Polymerase I Activity
RNA Polymerase Ii Activity
RNA Polymerase Iii Activity
DNA Binding
DNA Directed 5' 3' RNA Polymerase Activity
RNA Directed 5' 3' RNA Polymerase Activity
Protein Binding
Transcription RNA Templated
Transcription DNA Templated
Transcription by RNA Polymerase I
Transcription by RNA Polymerase Ii
Transcription by RNA Polymerase Iii
Termination of RNA Polymerase Iii Transcription
Ribosome Biogenesis
TRNA Transcription by RNA Polymerase Iii
Nucleus
Nucleoplasm
DNA Directed RNA Polymerase Ii Core Complex
DNA Directed RNA Polymerase Iii Complex
DNA Directed RNA Polymerase I Complex
I
DNA-directed RNA polymerase II subunit 9 (1Y1Y:I)
Nucleic Acid Binding
DNA Directed 5' 3' RNA Polymerase Activity
RNA Directed 5' 3' RNA Polymerase Activity
Protein Binding
Zinc Ion Binding
Metal Ion Binding
Transcription RNA Templated
Maintenance of Transcriptional Fidelity During DNA Templated Transcription Elongation From RNA Polymerase Ii Promoter
DNA Repair
Transcription Coupled Nucleotide Excision Repair
Transcription DNA Templated
Transcription by RNA Polymerase Ii
Transcription Initiation From RNA Polymerase Ii Promoter
MRNA Cleavage
Cellular Response to DNA Damage Stimulus
Nucleus
DNA Directed RNA Polymerase Ii Core Complex
Nucleolus
J
DNA-directed RNA polymerases I/II/III subunit 10 (1Y1Y:J)
RNA Polymerase I Activity
RNA Polymerase Ii Activity
RNA Polymerase Iii Activity
DNA Binding
DNA Directed 5' 3' RNA Polymerase Activity
RNA Directed 5' 3' RNA Polymerase Activity
Protein Binding
Zinc Ion Binding
Metal Ion Binding
Transcription RNA Templated
Transcription DNA Templated
Transcription by RNA Polymerase I
Transcription by RNA Polymerase Ii
Transcription by RNA Polymerase Iii
Termination of RNA Polymerase Iii Transcription
Ribosome Biogenesis
TRNA Transcription by RNA Polymerase Iii
Nucleus
Nucleoplasm
DNA Directed RNA Polymerase Ii Core Complex
DNA Directed RNA Polymerase Iii Complex
Nucleolus
DNA Directed RNA Polymerase I Complex
K
DNA-directed RNA polymerase II 13.6 kDa polypeptide (1Y1Y:K)
RNA Polymerase Ii Activity
DNA Binding
DNA Directed 5' 3' RNA Polymerase Activity
RNA Directed 5' 3' RNA Polymerase Activity
Protein Binding
Protein Dimerization Activity
Transcription RNA Templated
Transcription DNA Templated
Transcription by RNA Polymerase Ii
Termination of RNA Polymerase Ii Transcription
Nucleus
DNA Directed RNA Polymerase Ii Core Complex
L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide (1Y1Y:L)
RNA Polymerase I Activity
RNA Polymerase Ii Activity
RNA Polymerase Iii Activity
DNA Binding
DNA Directed 5' 3' RNA Polymerase Activity
RNA Directed 5' 3' RNA Polymerase Activity
Protein Binding
Zinc Ion Binding
Metal Ion Binding
Transcription RNA Templated
Transcription DNA Templated
Transcription by RNA Polymerase I
Transcription by RNA Polymerase Ii
Transcription by RNA Polymerase Iii
Termination of RNA Polymerase Iii Transcription
Ribosome Biogenesis
TRNA Transcription by RNA Polymerase Iii
Nucleus
Nucleoplasm
DNA Directed RNA Polymerase Ii Core Complex
DNA Directed RNA Polymerase Iii Complex
Nucleolus
DNA Directed RNA Polymerase I Complex
S
Transcription elongation factor S-II (1Y1Y:S)
Nucleic Acid Binding
Zinc Ion Binding
Transcription DNA Templated
Regulation of Transcription DNA Templated
Nucleus
Protein Modification Annotation
Type
PDB Residue Nr.
Description