Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS.

Kettenberger, H; Armache, K.J; Cramer, P.

Gene Product Annotation Gene Ontology Consortium Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
T	5'-D(PTPAPCPGPCPCP*T)-3' (1Y1Y:T)	none	none	none
P	5'-R(PAPGPGPC)-3' (1Y1Y:P)	none	none	none
A	DNA-directed RNA polymerase II largest subunit (1Y1Y:A)	RNA Polymerase Ii Activity DNA Binding DNA Directed 5' 3' RNA Polymerase Activity RNA Directed 5' 3' RNA Polymerase Activity Protein Binding Transferase Activity Nucleotidyltransferase Activity Metal Ion Binding	Transcription RNA Templated Transcription DNA Templated Transcription by RNA Polymerase Ii Translesion Synthesis	Nucleus DNA Directed RNA Polymerase Ii Core Complex Cytoplasmic Stress Granule
B	DNA-directed RNA polymerase II 140 kDa polypeptide (1Y1Y:B)	RNA Polymerase Ii Activity DNA Binding DNA Directed 5' 3' RNA Polymerase Activity RNA Directed 5' 3' RNA Polymerase Activity Protein Binding Transferase Activity Nucleotidyltransferase Activity Ribonucleoside Binding Metal Ion Binding	Transcription RNA Templated Transcription DNA Templated Transcription by RNA Polymerase Ii	Nucleus DNA Directed RNA Polymerase Ii Core Complex Cytoplasmic Stress Granule
C	DNA-directed RNA polymerase II 45 kDa polypeptide (1Y1Y:C)	RNA Polymerase Ii Activity DNA Binding DNA Directed 5' 3' RNA Polymerase Activity RNA Directed 5' 3' RNA Polymerase Activity Protein Binding Metal Ion Binding Protein Dimerization Activity	Transcription RNA Templated Transcription DNA Templated Transcription by RNA Polymerase Ii Termination of RNA Polymerase Ii Transcription	Nucleus Nucleoplasm DNA Directed RNA Polymerase Ii Core Complex
D	DNA-directed RNA polymerase II 32 kDa polypeptide (1Y1Y:D)	Nucleotide Binding Single Stranded DNA Binding Single Stranded RNA Binding Catalytic Activity DNA Directed 5' 3' RNA Polymerase Activity RNA Directed 5' 3' RNA Polymerase Activity Protein Binding Translation Initiation Factor Binding	Nuclear Transcribed MRNA Catabolic Process Deadenylation Dependent Decay Transcription RNA Templated Transcription DNA Templated Transcription by RNA Polymerase Ii Transcription Initiation From RNA Polymerase Ii Promoter MRNA Processing MRNA Export From Nucleus in Response to Heat Stress Recruitment of 3' End Processing Factors to RNA Polymerase Ii Holoenzyme Complex Cellular Metabolic Process Positive Regulation of Translational Initiation	P Body Nucleus DNA Directed RNA Polymerase Ii Core Complex Cytoplasm
E	DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide (1Y1Y:E)	RNA Polymerase I Activity RNA Polymerase Ii Activity RNA Polymerase Iii Activity DNA Binding DNA Directed 5' 3' RNA Polymerase Activity RNA Directed 5' 3' RNA Polymerase Activity Protein Binding	Transcription RNA Templated Transcription DNA Templated Transcription by RNA Polymerase I Transcription by RNA Polymerase Ii Transcription by RNA Polymerase Iii Termination of RNA Polymerase Iii Transcription Ribosome Biogenesis TRNA Transcription by RNA Polymerase Iii	Nucleus Nucleoplasm DNA Directed RNA Polymerase Ii Core Complex DNA Directed RNA Polymerase Iii Complex DNA Directed RNA Polymerase I Complex
F	DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide (1Y1Y:F)	RNA Polymerase I Activity RNA Polymerase Ii Activity RNA Polymerase Iii Activity DNA Binding DNA Directed 5' 3' RNA Polymerase Activity RNA Directed 5' 3' RNA Polymerase Activity Protein Binding	Transcription RNA Templated Transcription DNA Templated Transcription by RNA Polymerase I Transcription by RNA Polymerase Ii Transcription by RNA Polymerase Iii Termination of RNA Polymerase Iii Transcription Ribosome Biogenesis TRNA Transcription by RNA Polymerase Iii	Nucleus Nucleoplasm DNA Directed RNA Polymerase Ii Core Complex DNA Directed RNA Polymerase Iii Complex DNA Directed RNA Polymerase I Complex Cytoplasm
G	DNA-directed RNA polymerase II 19 kDa polypeptide (1Y1Y:G)	Nucleic Acid Binding Single Stranded DNA Binding Single Stranded RNA Binding DNA Directed 5' 3' RNA Polymerase Activity RNA Directed 5' 3' RNA Polymerase Activity Protein Binding Translation Initiation Factor Binding	Nuclear Transcribed MRNA Catabolic Process Exonucleolytic Transcription RNA Templated Transcription DNA Templated Transcription by RNA Polymerase Ii Transcription Initiation From RNA Polymerase Ii Promoter Positive Regulation of Translational Initiation Positive Regulation of Nuclear Transcribed MRNA Poly(a) Tail Shortening	P Body Nucleus DNA Directed RNA Polymerase Ii Core Complex Cytoplasm
H	DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide (1Y1Y:H)	RNA Polymerase I Activity RNA Polymerase Ii Activity RNA Polymerase Iii Activity DNA Binding DNA Directed 5' 3' RNA Polymerase Activity RNA Directed 5' 3' RNA Polymerase Activity Protein Binding	Transcription RNA Templated Transcription DNA Templated Transcription by RNA Polymerase I Transcription by RNA Polymerase Ii Transcription by RNA Polymerase Iii Termination of RNA Polymerase Iii Transcription Ribosome Biogenesis TRNA Transcription by RNA Polymerase Iii	Nucleus Nucleoplasm DNA Directed RNA Polymerase Ii Core Complex DNA Directed RNA Polymerase Iii Complex DNA Directed RNA Polymerase I Complex
I	DNA-directed RNA polymerase II subunit 9 (1Y1Y:I)	Nucleic Acid Binding DNA Directed 5' 3' RNA Polymerase Activity RNA Directed 5' 3' RNA Polymerase Activity Protein Binding Zinc Ion Binding Metal Ion Binding	Transcription RNA Templated Maintenance of Transcriptional Fidelity During DNA Templated Transcription Elongation From RNA Polymerase Ii Promoter DNA Repair Transcription Coupled Nucleotide Excision Repair Transcription DNA Templated Transcription by RNA Polymerase Ii Transcription Initiation From RNA Polymerase Ii Promoter MRNA Cleavage Cellular Response to DNA Damage Stimulus	Nucleus DNA Directed RNA Polymerase Ii Core Complex Nucleolus
J	DNA-directed RNA polymerases I/II/III subunit 10 (1Y1Y:J)	RNA Polymerase I Activity RNA Polymerase Ii Activity RNA Polymerase Iii Activity DNA Binding DNA Directed 5' 3' RNA Polymerase Activity RNA Directed 5' 3' RNA Polymerase Activity Protein Binding Zinc Ion Binding Metal Ion Binding	Transcription RNA Templated Transcription DNA Templated Transcription by RNA Polymerase I Transcription by RNA Polymerase Ii Transcription by RNA Polymerase Iii Termination of RNA Polymerase Iii Transcription Ribosome Biogenesis TRNA Transcription by RNA Polymerase Iii	Nucleus Nucleoplasm DNA Directed RNA Polymerase Ii Core Complex DNA Directed RNA Polymerase Iii Complex Nucleolus DNA Directed RNA Polymerase I Complex
K	DNA-directed RNA polymerase II 13.6 kDa polypeptide (1Y1Y:K)	RNA Polymerase Ii Activity DNA Binding DNA Directed 5' 3' RNA Polymerase Activity RNA Directed 5' 3' RNA Polymerase Activity Protein Binding Protein Dimerization Activity	Transcription RNA Templated Transcription DNA Templated Transcription by RNA Polymerase Ii Termination of RNA Polymerase Ii Transcription	Nucleus DNA Directed RNA Polymerase Ii Core Complex
L	DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide (1Y1Y:L)	RNA Polymerase I Activity RNA Polymerase Ii Activity RNA Polymerase Iii Activity DNA Binding DNA Directed 5' 3' RNA Polymerase Activity RNA Directed 5' 3' RNA Polymerase Activity Protein Binding Zinc Ion Binding Metal Ion Binding	Transcription RNA Templated Transcription DNA Templated Transcription by RNA Polymerase I Transcription by RNA Polymerase Ii Transcription by RNA Polymerase Iii Termination of RNA Polymerase Iii Transcription Ribosome Biogenesis TRNA Transcription by RNA Polymerase Iii	Nucleus Nucleoplasm DNA Directed RNA Polymerase Ii Core Complex DNA Directed RNA Polymerase Iii Complex Nucleolus DNA Directed RNA Polymerase I Complex
S	Transcription elongation factor S-II (1Y1Y:S)	Nucleic Acid Binding Zinc Ion Binding	Transcription DNA Templated Regulation of Transcription DNA Templated	Nucleus

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species
A	d1y1ya_	Low resolution protein structures	RNA polymerase	RNA polymerase	RNA polymerase	Complete 12-subunit RNA polymerase II complex	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
B	d1y1yb_	Low resolution protein structures	RNA polymerase	RNA polymerase	RNA polymerase	Complete 12-subunit RNA polymerase II complex	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
C	d1y1yc_	Low resolution protein structures	RNA polymerase	RNA polymerase	RNA polymerase	Complete 12-subunit RNA polymerase II complex	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
D	d1y1yd_	Low resolution protein structures	RNA polymerase	RNA polymerase	RNA polymerase	Complete 12-subunit RNA polymerase II complex	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
E	d1y1ye_	Low resolution protein structures	RNA polymerase	RNA polymerase	RNA polymerase	Complete 12-subunit RNA polymerase II complex	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
F	d1y1yf_	Low resolution protein structures	RNA polymerase	RNA polymerase	RNA polymerase	Complete 12-subunit RNA polymerase II complex	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
G	d1y1yg_	Low resolution protein structures	RNA polymerase	RNA polymerase	RNA polymerase	Complete 12-subunit RNA polymerase II complex	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
H	d1y1yh_	Low resolution protein structures	RNA polymerase	RNA polymerase	RNA polymerase	Complete 12-subunit RNA polymerase II complex	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
I	d1y1yi_	Low resolution protein structures	RNA polymerase	RNA polymerase	RNA polymerase	Complete 12-subunit RNA polymerase II complex	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
J	d1y1yj_	Low resolution protein structures	RNA polymerase	RNA polymerase	RNA polymerase	Complete 12-subunit RNA polymerase II complex	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
K	d1y1yk_	Low resolution protein structures	RNA polymerase	RNA polymerase	RNA polymerase	Complete 12-subunit RNA polymerase II complex	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
L	d1y1yl_	Low resolution protein structures	RNA polymerase	RNA polymerase	RNA polymerase	Complete 12-subunit RNA polymerase II complex	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
S	d1y1ys_	Low resolution protein structures	RNA polymerase	RNA polymerase	RNA polymerase	Complete 12-subunit RNA polymerase II complex	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

139717 Biological Macromolecular Structures Enabling Breakthroughs in Research and Education

1Y1Y

RNA Polymerase II-TFIIS-DNA/RNA complex

Macromolecule Annotations for the Entities in PDB 1Y1Y

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

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Protein Modification Annotation

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139717 Biological Macromolecular Structures Enabling Breakthroughs in Research and Education

1Y1Y

RNA Polymerase II-TFIIS-DNA/RNA complex

Macromolecule Annotations for the Entities in PDB 1Y1Y

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Protein Family Annotation Pfam Database Homepage

Gene Product Annotation Gene Ontology Consortium Homepage

Protein Modification Annotation