Macromolecule Annotations for the Entities in PDB 1Y1W

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A d1y1wa_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
B d1y1wb_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
C d1y1wc_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
D d1y1wd_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
E d1y1we_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
F d1y1wf_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
G d1y1wg_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
H d1y1wh_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
I d1y1wi_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
J d1y1wj_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
K d1y1wk_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
L d1y1wl_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
B4 1y1wB04 Alpha Beta Alpha-Beta Complex Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3
B6 1y1wB06 Mainly Beta Beta Barrel Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6
B7 1y1wB07 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P)
C1 1y1wC01 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2
C2 1y1wC02 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 RNA Polymerase Alpha Subunit; Chain A, domain 2
E1 1y1wE01 Alpha Beta 3-Layer(aba) Sandwich Dna-directed Rna Polymerases I, Ii, And Iii 27 Kd Polypeptide; Chain: A; domain 1
E2 1y1wE02 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit
F 1y1wF00 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit
G1 1y1wG01 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1 DNA-directed RNA polymerase ii subunit; domain 1
G2 1y1wG02 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
H 1y1wH00 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
I1 1y1wI01 Mainly Beta Single Sheet N-terminal domain of TfIIb
I2 1y1wI02 Mainly Beta Single Sheet N-terminal domain of TfIIb
J 1y1wJ00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Homeodomain-like
K 1y1wK00 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2
L 1y1wL00 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
T 5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*GP*CP*CP*TP*GP*GP*TP*CP*AP*T)- 3' (1Y1W:T)
  • none
  • none
  • none
N 5'-D(*AP*AP*GP*TP*AP*CP*T)-3' (1Y1W:N)
  • none
  • none
  • none
P 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3' (1Y1W:P)
  • none
  • none
  • none
A DNA-directed RNA polymerase II largest subunit (1Y1W:A)
B DNA-directed RNA polymerase II 140 kDa polypeptide (1Y1W:B)
C DNA-directed RNA polymerase II 45 kDa polypeptide (1Y1W:C)
D DNA-directed RNA polymerase II 32 kDa polypeptide (1Y1W:D)
E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide (1Y1W:E)
F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide (1Y1W:F)
G DNA-directed RNA polymerase II 19 kDa polypeptide (1Y1W:G)
H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide (1Y1W:H)
I DNA-directed RNA polymerase II subunit 9 (1Y1W:I)
J DNA-directed RNA polymerases I/II/III subunit 10 (1Y1W:J)
K DNA-directed RNA polymerase II 13.6 kDa polypeptide (1Y1W:K)
L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide (1Y1W:L)

Protein Modification Annotation

Type PDB Residue Nr. Description