Macromolecule Annotations for the Entities in PDB 1Y1V

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A d1y1va_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
B d1y1vb_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
C d1y1vc_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
D d1y1vd_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
E d1y1ve_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
F d1y1vf_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
G d1y1vg_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
H d1y1vh_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
I d1y1vi_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
J d1y1vj_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
K d1y1vk_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
L d1y1vl_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
S d1y1vs_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
B4 1y1vB04 Alpha Beta Alpha-Beta Complex Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3
B6 1y1vB06 Mainly Beta Beta Barrel Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6
B7 1y1vB07 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P)
C1 1y1vC01 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2
C2 1y1vC02 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 RNA Polymerase Alpha Subunit; Chain A, domain 2
E1 1y1vE01 Alpha Beta 3-Layer(aba) Sandwich Dna-directed Rna Polymerases I, Ii, And Iii 27 Kd Polypeptide; Chain: A; domain 1
E2 1y1vE02 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit
F 1y1vF00 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit
G1 1y1vG01 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1 DNA-directed RNA polymerase ii subunit; domain 1
G2 1y1vG02 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
H 1y1vH00 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
I1 1y1vI01 Mainly Beta Single Sheet N-terminal domain of TfIIb
I2 1y1vI02 Mainly Beta Single Sheet N-terminal domain of TfIIb
J 1y1vJ00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Homeodomain-like
K 1y1vK00 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2
L 1y1vL00 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L
S1 1y1vS01 Mainly Beta Single Sheet N-terminal domain of TfIIb

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A DNA-directed RNA polymerase II largest subunit (1Y1V:A)
B DNA-directed RNA polymerase II 140 kDa polypeptide (1Y1V:B)
C DNA-directed RNA polymerase II 45 kDa polypeptide (1Y1V:C)
D DNA-directed RNA polymerase II 32 kDa polypeptide (1Y1V:D)
E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide (1Y1V:E)
F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide (1Y1V:F)
G DNA-directed RNA polymerase II 19 kDa polypeptide (1Y1V:G)
H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide (1Y1V:H)
I DNA-directed RNA polymerase II subunit 9 (1Y1V:I)
J DNA-directed RNA polymerases I/II/III subunit 10 (1Y1V:J)
K DNA-directed RNA polymerase II 13.6 kDa polypeptide (1Y1V:K)
L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide (1Y1V:L)
S Transcription elongation factor S-II (1Y1V:S)

Protein Modification Annotation

Type PDB Residue Nr. Description