Macromolecule Annotations for the Entities in PDB 1WCM

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A d1wcma_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
B d1wcmb_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
C d1wcmc_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
D d1wcmd_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
E d1wcme_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
F d1wcmf_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
G d1wcmg_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
H d1wcmh_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
I d1wcmi_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
J d1wcmj_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
K d1wcmk_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
L d1wcml_ Low resolution protein structures RNA polymerase RNA polymerase RNA polymerase Complete 12-subunit RNA polymerase II complex Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
B4 1wcmB04 Alpha Beta Alpha-Beta Complex Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3
B6 1wcmB06 Mainly Beta Beta Barrel Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6
B7 1wcmB07 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P)
C1 1wcmC01 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2
C2 1wcmC02 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 RNA Polymerase Alpha Subunit; Chain A, domain 2
E1 1wcmE01 Alpha Beta 3-Layer(aba) Sandwich Dna-directed Rna Polymerases I, Ii, And Iii 27 Kd Polypeptide; Chain: A; domain 1
E2 1wcmE02 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit
F 1wcmF00 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit
G1 1wcmG01 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1 DNA-directed RNA polymerase ii subunit; domain 1
G2 1wcmG02 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
H 1wcmH00 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
I1 1wcmI01 Mainly Beta Single Sheet N-terminal domain of TfIIb
I2 1wcmI02 Mainly Beta Single Sheet N-terminal domain of TfIIb
J 1wcmJ00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Homeodomain-like
K 1wcmK00 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2
L 1wcmL00 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT (1WCM:A)
B DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT (1WCM:B)
C DNA-DIRECTED RNA POLYMERASE II 45 KDA POLYPEPTIDE (1WCM:C)
D DNA-DIRECTED RNA POLYMERASE II 32 KDA POLYPEPTIDE (1WCM:D)
  • none
E DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE (1WCM:E)
F DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE (1WCM:F)
G DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE (1WCM:G)
H DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE (1WCM:H)
I DNA-DIRECTED RNA POLYMERASE II 14.2 KDA POLYPEPTIDE (1WCM:I)
J DNA-DIRECTED RNA POLYMERASES I, II AND III 8.3 KDA POLYPEPTIDE (1WCM:J)
K DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE (1WCM:K)
L DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE (1WCM:L)

Protein Modification Annotation

Type PDB Residue Nr. Description