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139555
Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
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Structure Summary
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Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
1VCB
THE VHL-ELONGINC-ELONGINB STRUCTURE
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
Download Files
FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Biological Assembly 1 (gz) (A+S)
Biological Assembly 2 (gz) (A+S)
Biological Assembly 3 (gz) (A+S)
Biological Assembly 4 (gz) (A+S)
Macromolecule Annotations for the Entities in PDB 1VCB
Domain Annotation: SCOP Classification
SCOP Database (version: 1.75) Homepage
Chains
Domain Info
Class
Fold
Superfamily
Family
Domain
Species
C
d1vcbc_
All beta proteins
Prealbumin-like
VHL
VHL
VHL
Human (Homo sapiens) [TaxId: 9606]
F
d1vcbf_
All beta proteins
Prealbumin-like
VHL
VHL
VHL
Human (Homo sapiens) [TaxId: 9606]
I
d1vcbi_
All beta proteins
Prealbumin-like
VHL
VHL
VHL
Human (Homo sapiens) [TaxId: 9606]
L
d1vcbl_
All beta proteins
Prealbumin-like
VHL
VHL
VHL
Human (Homo sapiens) [TaxId: 9606]
A
d1vcba_
Alpha and beta proteins (a+b)
beta-Grasp (ubiquitin-like)
Ubiquitin-like
Ubiquitin-related
Elongin B
Human (Homo sapiens) [TaxId: 9606]
D
d1vcbd_
Alpha and beta proteins (a+b)
beta-Grasp (ubiquitin-like)
Ubiquitin-like
Ubiquitin-related
Elongin B
Human (Homo sapiens) [TaxId: 9606]
G
d1vcbg_
Alpha and beta proteins (a+b)
beta-Grasp (ubiquitin-like)
Ubiquitin-like
Ubiquitin-related
Elongin B
Human (Homo sapiens) [TaxId: 9606]
J
d1vcbj_
Alpha and beta proteins (a+b)
beta-Grasp (ubiquitin-like)
Ubiquitin-like
Ubiquitin-related
Elongin B
Human (Homo sapiens) [TaxId: 9606]
B
d1vcbb_
Alpha and beta proteins (a+b)
POZ domain
POZ domain
BTB/POZ domain
Elongin C
Human (Homo sapiens) [TaxId: 9606]
E
d1vcbe_
Alpha and beta proteins (a+b)
POZ domain
POZ domain
BTB/POZ domain
Elongin C
Human (Homo sapiens) [TaxId: 9606]
H
d1vcbh_
Alpha and beta proteins (a+b)
POZ domain
POZ domain
BTB/POZ domain
Elongin C
Human (Homo sapiens) [TaxId: 9606]
K
d1vcbk_
Alpha and beta proteins (a+b)
POZ domain
POZ domain
BTB/POZ domain
Elongin C
Human (Homo sapiens) [TaxId: 9606]
Domain Annotation: CATH
CATH Database (version 4.0.0) Homepage
Chains
Domain
Class
Architecture
Topology
Homology
A
1vcbA00
Alpha Beta
Roll
Ubiquitin-like (UB roll)
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
B
1vcbB00
Alpha Beta
2-Layer Sandwich
Potassium Channel Kv1.1; Chain A
Potassium Channel Kv1.1; Chain A
C1
1vcbC01
Mainly Alpha
Orthogonal Bundle
Elongin C; Chain C, domain 1
Elongin C, Chain C domain 1
C2
1vcbC02
Mainly Beta
Sandwich
Immunoglobulin-like
D
1vcbD00
Alpha Beta
Roll
Ubiquitin-like (UB roll)
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
E
1vcbE00
Alpha Beta
2-Layer Sandwich
Potassium Channel Kv1.1; Chain A
Potassium Channel Kv1.1; Chain A
F1
1vcbF01
Mainly Alpha
Orthogonal Bundle
Elongin C; Chain C, domain 1
Elongin C, Chain C domain 1
F2
1vcbF02
Mainly Beta
Sandwich
Immunoglobulin-like
G
1vcbG00
Alpha Beta
Roll
Ubiquitin-like (UB roll)
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
H
1vcbH00
Alpha Beta
2-Layer Sandwich
Potassium Channel Kv1.1; Chain A
Potassium Channel Kv1.1; Chain A
I1
1vcbI01
Mainly Alpha
Orthogonal Bundle
Elongin C; Chain C, domain 1
Elongin C, Chain C domain 1
I2
1vcbI02
Mainly Beta
Sandwich
Immunoglobulin-like
J
1vcbJ00
Alpha Beta
Roll
Ubiquitin-like (UB roll)
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
K
1vcbK00
Alpha Beta
2-Layer Sandwich
Potassium Channel Kv1.1; Chain A
Potassium Channel Kv1.1; Chain A
L1
1vcbL01
Mainly Alpha
Orthogonal Bundle
Elongin C; Chain C, domain 1
Elongin C, Chain C domain 1
L2
1vcbL02
Mainly Beta
Sandwich
Immunoglobulin-like
Protein Family Annotation
Pfam Database Homepage
Chains
Pfam Accession
Pfam Identifier
Pfam Description
Type
Source
Gene Product Annotation
Gene Ontology Consortium Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A,D,G,J
PROTEIN (ELONGIN B) (1VCB:A,D,G,J)
Protein Binding
Ubiquitin Protein Ligase Binding
Transcription DNA Templated
Regulation of Transcription DNA Templated
Transcription by RNA Polymerase Ii
Transcription Elongation From RNA Polymerase Ii Promoter
Protein Ubiquitination
Post Translational Protein Modification
Regulation of Transcription From RNA Polymerase Ii Promoter in Response to Hypoxia
Protein Containing Complex Assembly
Nucleus
Nucleoplasm
Cytosol
Vcb Complex
Cul2 Ring Ubiquitin Ligase Complex
Cul5 Ring Ubiquitin Ligase Complex
Elongin Complex
B,E,H,K
PROTEIN (ELONGIN C) (1VCB:B,E,H,K)
Ubiquitin Protein Transferase Activity
Protein Binding
Transcription DNA Templated
Regulation of Transcription DNA Templated
Regulation of Transcription by RNA Polymerase Ii
Transcription by RNA Polymerase Ii
Transcription Elongation From RNA Polymerase Ii Promoter
Ubiquitin Dependent Protein Catabolic Process
Viral Process
Protein Ubiquitination
Positive Regulation of Transcription Elongation From RNA Polymerase Ii Promoter
Post Translational Protein Modification
Regulation of Transcription From RNA Polymerase Ii Promoter in Response to Hypoxia
Nucleus
Nucleoplasm
Cytosol
Elongin Complex
C,F,I,L
PROTEIN (VHL) (1VCB:C,F,I,L)
none
none
none
Protein Modification Annotation
Type
PDB Residue Nr.
Description