Macromolecule Annotations for the Entities in PDB 1VCB

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
C d1vcbc_ All beta proteins Prealbumin-like VHL VHL VHL Human (Homo sapiens) [TaxId: 9606]
F d1vcbf_ All beta proteins Prealbumin-like VHL VHL VHL Human (Homo sapiens) [TaxId: 9606]
I d1vcbi_ All beta proteins Prealbumin-like VHL VHL VHL Human (Homo sapiens) [TaxId: 9606]
L d1vcbl_ All beta proteins Prealbumin-like VHL VHL VHL Human (Homo sapiens) [TaxId: 9606]
A d1vcba_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Elongin B Human (Homo sapiens) [TaxId: 9606]
D d1vcbd_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Elongin B Human (Homo sapiens) [TaxId: 9606]
G d1vcbg_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Elongin B Human (Homo sapiens) [TaxId: 9606]
J d1vcbj_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Elongin B Human (Homo sapiens) [TaxId: 9606]
B d1vcbb_ Alpha and beta proteins (a+b) POZ domain POZ domain BTB/POZ domain Elongin C Human (Homo sapiens) [TaxId: 9606]
E d1vcbe_ Alpha and beta proteins (a+b) POZ domain POZ domain BTB/POZ domain Elongin C Human (Homo sapiens) [TaxId: 9606]
H d1vcbh_ Alpha and beta proteins (a+b) POZ domain POZ domain BTB/POZ domain Elongin C Human (Homo sapiens) [TaxId: 9606]
K d1vcbk_ Alpha and beta proteins (a+b) POZ domain POZ domain BTB/POZ domain Elongin C Human (Homo sapiens) [TaxId: 9606]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A 1vcbA00 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
B 1vcbB00 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A
C1 1vcbC01 Mainly Alpha Orthogonal Bundle Elongin C; Chain C, domain 1 Elongin C, Chain C domain 1
C2 1vcbC02 Mainly Beta Sandwich Immunoglobulin-like
D 1vcbD00 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
E 1vcbE00 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A
F1 1vcbF01 Mainly Alpha Orthogonal Bundle Elongin C; Chain C, domain 1 Elongin C, Chain C domain 1
F2 1vcbF02 Mainly Beta Sandwich Immunoglobulin-like
G 1vcbG00 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
H 1vcbH00 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A
I1 1vcbI01 Mainly Alpha Orthogonal Bundle Elongin C; Chain C, domain 1 Elongin C, Chain C domain 1
I2 1vcbI02 Mainly Beta Sandwich Immunoglobulin-like
J 1vcbJ00 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
K 1vcbK00 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A
L1 1vcbL01 Mainly Alpha Orthogonal Bundle Elongin C; Chain C, domain 1 Elongin C, Chain C domain 1
L2 1vcbL02 Mainly Beta Sandwich Immunoglobulin-like

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF00240 ubiquitin Ubiquitin family Domain This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5]. PFAM PF00240
C PF01847 VHL von Hippel-Lindau disease tumour suppressor protein Domain VHL forms a ternary complex with the elonginB Swiss:O44226 and elonginC Swiss:O13292 proteins. This complex binds Cul2, which then is involved in regulation of vascular endothelial growth factor Swiss:P15692 mRNA. PFAM PF01847
B PF03931 Skp1_POZ Skp1 family, tetramerisation domain Domain PFAM PF03931

Protein Modification Annotation

Type PDB Residue Nr. Description