Macromolecule Annotations for the Entities in PDB 1S72

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A91-237 d1s72a1 All beta proteins SH3-like barrel Translation proteins SH3-like domain C-terminal domain of ribosomal protein L2 C-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
A1-90 d1s72a2 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like N-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
B d1s72b_ All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 Archaeon Haloarcula marismortui [TaxId: 2238]
C d1s72c_ Alpha and beta proteins (a/b) Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Archaeon Haloarcula marismortui [TaxId: 2238]
D d1s72d_ Alpha and beta proteins (a+b) RL5-like RL5-like Ribosomal protein L5 Ribosomal protein L5 Archaeon Haloarcula marismortui [TaxId: 2238]
E1-79 d1s72e1 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
E80-172 d1s72e2 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
F d1s72f_ Alpha and beta proteins (a+b) Bacillus chorismate mutase-like L30e-like L30e/L7ae ribosomal proteins Ribosomal protein L7ae Archaeon Haloarcula marismortui [TaxId: 2238]
G d1s72g_ Peptides Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Archaeon Haloarcula marismortui [TaxId: 2238]
H d1s72h_ Alpha and beta proteins (a+b) alpha/beta-Hammerhead Ribosomal protein L16p/L10e Ribosomal protein L10e Ribosomal protein L10e Archaeon Haloarcula marismortui [TaxId: 2238]
I d1s72i_ All alpha proteins DNA/RNA-binding 3-helical bundle Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain Archaeon Haloarcula marismortui [TaxId: 2238]
J d1s72j_ Alpha and beta proteins (a/b) Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Archaeon Haloarcula marismortui [TaxId: 2238]
K d1s72k_ All beta proteins Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Archaeon Haloarcula marismortui [TaxId: 2238]
L d1s72l_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L15 (L15p) Archaeon Haloarcula marismortui [TaxId: 2238]
M d1s72m_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L15e Ribosomal protein L15e Archaeon Haloarcula marismortui [TaxId: 2238]
N d1s72n_ Alpha and beta proteins (a/b) Ribonuclease H-like motif Translational machinery components Ribosomal protein L18 and S11 Ribosomal protein L18 (L18p) Archaeon Haloarcula marismortui [TaxId: 2238]
O d1s72o_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L18e Archaeon Haloarcula marismortui [TaxId: 2238]
P d1s72p_ All alpha proteins Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Archaeon Haloarcula marismortui [TaxId: 2238]
Q d1s72q_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L21e Archaeon Haloarcula marismortui [TaxId: 2238]
R d1s72r_ Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Archaeon Haloarcula marismortui [TaxId: 2238]
S d1s72s_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 Archaeon Haloarcula marismortui [TaxId: 2238]
T d1s72t_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L24 (L24p) Archaeon Haloarcula marismortui [TaxId: 2238]
U d1s72u_ Small proteins Glucocorticoid receptor-like (DNA-binding domain) Glucocorticoid receptor-like (DNA-binding domain) Ribosomal protein L24e Ribosomal protein L24e Archaeon Haloarcula marismortui [TaxId: 2238]
V d1s72v_ All alpha proteins Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Archaeon Haloarcula marismortui [TaxId: 2238]
W d1s72w_ Alpha and beta proteins (a+b) Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Archaeal L30 (L30a) Archaeon Haloarcula marismortui [TaxId: 2238]
X d1s72x_ Alpha and beta proteins (a+b) Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Archaeon Haloarcula marismortui [TaxId: 2238]
Y d1s72y_ Alpha and beta proteins (a/b) Barstar-like Ribosomal protein L32e Ribosomal protein L32e Ribosomal protein L32e Archaeon Haloarcula marismortui [TaxId: 2238]
Z d1s72z_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37ae Ribosomal protein L37ae Archaeon Haloarcula marismortui [TaxId: 2238]
1 d1s721_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37e Ribosomal protein L37e Archaeon Haloarcula marismortui [TaxId: 2238]
2 d1s722_ All alpha proteins Non-globular all-alpha subunits of globular proteins Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e Archaeon Haloarcula marismortui [TaxId: 2238]
3 d1s723_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L44e Ribosomal protein L44e Archaeon Haloarcula marismortui [TaxId: 2238]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
1 1s72100 Mainly Beta Single Sheet N-terminal domain of TfIIb
2 1s72200 Mainly Alpha Orthogonal Bundle Atp Synthase Epsilon Chain; Chain: I; Ribosomal protein L39e
3 1s72300 Alpha Beta Roll Nuclear Transport Factor 2; Chain: A,
A1 1s72A01 Mainly Beta Roll SH3 type barrels.
A2 1s72A02 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
A3 1s72A03 Few Secondary Structures Irregular Ribosomal protein L2; domain 3 Ribosomal protein L2, domain 3
B1 1s72B01 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3 Translation factors
B2 1s72B02 Alpha Beta 2-Layer Sandwich Ribosomal Protein L3; Chain: B; domain 2,
B3 1s72B03 Few Secondary Structures Irregular Ribosomal protein L3; domain 3 Ribosomal protein L3, domain 3
C 1s72C00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L4; Chain: A;
D 1s72D00 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A,
E1 1s72E01 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
E2 1s72E02 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
F 1s72F00 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A;
H 1s72H00 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3
I 1s72I00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A
J 1s72J00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A;
K 1s72K00 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal Protein L14;
L1 1s72L01 Few Secondary Structures Irregular Molecule: Ribosomal Protein L15; Chain: K; domain 1
L2 1s72L02 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
M 1s72M00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal protein L15e Ribosomal protein l15e
N 1s72N00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
O 1s72O00 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
P1 1s72P01 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1
P2 1s72P02 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
P3 1s72P03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces Single Heli x bin
Q 1s72Q00 Mainly Beta Roll SH3 type barrels. Myosin S1 fragment SH3-like barrel
R 1s72R00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal Protein L22; Chain A
S 1s72S00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
T 1s72T00 Mainly Beta Roll SH3 type barrels.
U 1s72U00 Mainly Beta Roll Ribosomal Protein L24e; Chain: T;
V 1s72V00 Mainly Alpha Orthogonal Bundle Helix Hairpins
W1 1s72W01 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A,
W2 1s72W02 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3
X 1s72X00 Alpha Beta Roll Ribosomal Protein L31e; Chain: W;
Z 1s72Z00 Mainly Beta Single Sheet N-terminal domain of TfIIb

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
D PF00281 Ribosomal_L5 Ribosomal protein L5 Domain PFAM PF00281
1 PF01907 Ribosomal_L37e Ribosomal protein L37e Family
Z PF01780 Ribosomal_L37ae Ribosomal L37ae protein family Family
D PF00673 Ribosomal_L5_C ribosomal L5P family C-terminus Domain This region is found associated with Pfam:PF00281. PFAM PF00673
G PF00466 Ribosomal_L10 Ribosomal protein L10 Family
Y PF01655 Ribosomal_L32e Ribosomal protein L32 Family
O PF00828 Ribosomal_L18e Ribosomal protein L18e/L15 Family
P PF01280 Ribosomal_L19e Ribosomal protein L19e Family
S PF00276 Ribosomal_L23 Ribosomal protein L23 Family
H PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e Family
K PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e Domain PFAM PF00238
2 PF00832 Ribosomal_L39 Ribosomal L39 protein Family
T PF00467 KOW KOW motif Family
J PF00572 Ribosomal_L13 Ribosomal protein L13 Family
B PF00297 Ribosomal_L3 Ribosomal protein L3 Family
E PF00347 Ribosomal_L6 Ribosomal protein L6 Domain PFAM PF00347
C PF00573 Ribosomal_L4 Ribosomal protein L4/L1 family Family
U PF01246 Ribosomal_L24e Ribosomal protein L24e Family
E PF00347 Ribosomal_L6 Ribosomal protein L6 Domain PFAM PF00347
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e Domain This family includes prokaryotic L30 and eukaryotic L7. PFAM PF00327
V PF00831 Ribosomal_L29 Ribosomal L29 protein Family
L PF00828 Ribosomal_L18e Ribosomal protein L18e/L15 Family
I PF00298 Ribosomal_L11 Ribosomal protein L11, RNA binding domain Domain PFAM PF00298
M PF00827 Ribosomal_L15e Ribosomal L15 Family
N PF00861 Ribosomal_L18p Ribosomal L18p/L5e family Family
A PF03947 Ribosomal_L2_C Ribosomal Proteins L2, C-terminal domain Domain PFAM PF03947
3 PF00935 Ribosomal_L44 Ribosomal protein L44 Family
R PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e Domain This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. PFAM PF00237
F PF01248 Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Domain This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. PFAM PF01248
A PF00181 Ribosomal_L2 Ribosomal Proteins L2, RNA binding domain Domain PFAM PF00181
X PF01198 Ribosomal_L31e Ribosomal protein L31e Family
Q PF01157 Ribosomal_L21e Ribosomal protein L21e Family

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
0 23S ribosomal RNA (1S72:0)
  • none
  • none
  • none
9 5S ribosomal RNA (1S72:9)
  • none
  • none
  • none
A 50S ribosomal protein L2P (1S72:A)
B 50S ribosomal protein L3P (1S72:B)
C 50S ribosomal protein L4E (1S72:C)
D 50S ribosomal protein L5P (1S72:D)
E 50S ribosomal protein L6P (1S72:E)
F 50S ribosomal protein L7Ae (1S72:F)
G Acidic ribosomal protein P0 homolog (1S72:G)
H 50S ribosomal protein L10e (1S72:H)
I 50S ribosomal protein L11P (1S72:I)
J 50S ribosomal protein L13P (1S72:J)
K 50S ribosomal protein L14P (1S72:K)
L 50S ribosomal protein L15P (1S72:L)
M 50S ribosomal protein L15e (1S72:M)
N 50S ribosomal protein L18P (1S72:N)
O 50S ribosomal protein L18e (1S72:O)
P 50S ribosomal protein L19E (1S72:P)
Q 50S ribosomal protein L21e (1S72:Q)
R 50S ribosomal protein L22P (1S72:R)
S 50S ribosomal protein L23P (1S72:S)
T 50S ribosomal protein L24P (1S72:T)
U 50S ribosomal protein L24E (1S72:U)
V 50S ribosomal protein L29P (1S72:V)
W 50S ribosomal protein L30P (1S72:W)
X 50S ribosomal protein L31e (1S72:X)
Y 50S ribosomal protein L32E (1S72:Y)
Z 50S ribosomal protein L37Ae (1S72:Z)
1 50S ribosomal protein L37e (1S72:1)
2 50S ribosomal protein L39e (1S72:2)
3 50S ribosomal protein L44E (1S72:3)

Protein Modification Annotation

Type PDB Residue Nr. Description