Macromolecule Annotations for the Entities in PDB 1QVR

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A4-148 d1qvra1 All alpha proteins Double Clp-N motif Double Clp-N motif Double Clp-N motif N-terminal domain of ClpB (heat shock protein F84.1) Thermus thermophilus [TaxId: 274]
A149-535 d1qvra2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain ClpB, AAA+ modules Thermus thermophilus [TaxId: 274]
A536-850 d1qvra3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain ClpB, AAA+ modules Thermus thermophilus [TaxId: 274]
B4-148 d1qvrb1 All alpha proteins Double Clp-N motif Double Clp-N motif Double Clp-N motif N-terminal domain of ClpB (heat shock protein F84.1) Thermus thermophilus [TaxId: 274]
B149-535 d1qvrb2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain ClpB, AAA+ modules Thermus thermophilus [TaxId: 274]
B536-850 d1qvrb3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain ClpB, AAA+ modules Thermus thermophilus [TaxId: 274]
C4-148 d1qvrc1 All alpha proteins Double Clp-N motif Double Clp-N motif Double Clp-N motif N-terminal domain of ClpB (heat shock protein F84.1) Thermus thermophilus [TaxId: 274]
C149-535 d1qvrc2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain ClpB, AAA+ modules Thermus thermophilus [TaxId: 274]
C536-850 d1qvrc3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain ClpB, AAA+ modules Thermus thermophilus [TaxId: 274]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein Domain This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, Pfam:PF00004) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilise the functional assembly [1]. The domain is associated with two Clp_N, Pfam:PF02861, at the N-terminus as well as AAA, Pfam:PF00004 and AAA_2, Pfam:PF07724. PFAM PF10431
A PF02861 Clp_N Clp amino terminal domain Family
A PF07724 AAA_2 AAA domain (Cdc48 subfamily) Domain This Pfam entry includes some of the AAA proteins not detected by the Pfam:PF00004 model. PFAM PF07724
A PF02861 Clp_N Clp amino terminal domain Family
A PF00004 AAA ATPase family associated with various cellular activities (AAA) Family

Gene Product Annotation Gene Ontology Consortium Homepage

Protein Modification Annotation

Type PDB Residue Nr. Description