Macromolecule Annotations for the Entities in PDB 1PDM

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A d1pdma_ Low resolution protein structures Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 [TaxId: 10665]
B d1pdmb_ Low resolution protein structures Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 [TaxId: 10665]
C d1pdmc_ Low resolution protein structures Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 [TaxId: 10665]
D d1pdmd_ Low resolution protein structures Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 [TaxId: 10665]
E d1pdme_ Low resolution protein structures Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 [TaxId: 10665]
F d1pdmf_ Low resolution protein structures Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 [TaxId: 10665]
G d1pdmg_ Low resolution protein structures Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 [TaxId: 10665]
H d1pdmh_ Low resolution protein structures Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 [TaxId: 10665]
I d1pdmi_ Low resolution protein structures Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 [TaxId: 10665]
J d1pdmj_ Low resolution protein structures Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 [TaxId: 10665]
K d1pdmk_ Low resolution protein structures Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 [TaxId: 10665]
L d1pdml_ Low resolution protein structures Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 3D cryo-EM reconstruction Bacteriophage T4 [TaxId: 10665]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF09215 Phage-Gp8 Bacteriophage T4, Gp8 Domain Members of this family of viral baseplate structural proteins adopt a structure consisting of a three-layer beta-sandwich with two finger-like loops containing an alpha-helix at the opposite sides of the sandwich. The two peripheral, five-stranded, antiparallel beta-sheets are stacked against the middle, four-stranded, antiparallel beta-sheet. Attachment of this family of proteins to the baseplate during assembly creates a binding site for subsequent attachment of Gp6 [1]. PFAM PF09215

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,B,C,D,E,F,G,H,I,J,K,L Baseplate structural protein Gp8 (1PDM:A,B,C,D,E,F,G,H,I,J,K,L)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description