Macromolecule Annotations for the Entities in PDB 1PD0

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF04811 Sec23_trunk Sec23/Sec24 trunk domain Domain COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. PFAM PF04811
A PF04815 Sec23_helical Sec23/Sec24 helical domain Domain COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is composed of five alpha helices. PFAM PF04815
A PF00626 Gelsolin Gelsolin repeat Domain PFAM PF00626
A PF04810 zf-Sec23_Sec24 Sec23/Sec24 zinc finger Domain COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is found to be zinc binding domain. PFAM PF04810
A PF08033 Sec23_BS Sec23/Sec24 beta-sandwich domain Domain PFAM PF08033

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A Protein transport protein Sec24 (1PD0:A)
B COPII-binding peptide of the integral membrane protein SED5 (1PD0:B)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description