Macromolecule Annotations for the Entities in PDB 1OYR

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A1-151 d1oyra1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Ribonuclease PH, domain 1 Bacillus subtilis [TaxId: 1423]
A152-242 d1oyra2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH, domain 2 Bacillus subtilis [TaxId: 1423]
B1-151 d1oyrb1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Ribonuclease PH, domain 1 Bacillus subtilis [TaxId: 1423]
B152-242 d1oyrb2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH, domain 2 Bacillus subtilis [TaxId: 1423]
C1-151 d1oyrc1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Ribonuclease PH, domain 1 Bacillus subtilis [TaxId: 1423]
C152-242 d1oyrc2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH, domain 2 Bacillus subtilis [TaxId: 1423]
D1-151 d1oyrd1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Ribonuclease PH, domain 1 Bacillus subtilis [TaxId: 1423]
D152-242 d1oyrd2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH, domain 2 Bacillus subtilis [TaxId: 1423]
E1-151 d1oyre1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Ribonuclease PH, domain 1 Bacillus subtilis [TaxId: 1423]
E152-242 d1oyre2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH, domain 2 Bacillus subtilis [TaxId: 1423]
F1-151 d1oyrf1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like Ribonuclease PH, domain 1 Bacillus subtilis [TaxId: 1423]
F152-242 d1oyrf2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like Ribonuclease PH, domain 2 Bacillus subtilis [TaxId: 1423]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF03725 RNase_PH_C 3' exoribonuclease family, domain 2 Domain This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria. PFAM PF03725
A PF01138 RNase_PH 3' exoribonuclease family, domain 1 Domain This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria. PFAM PF01138

Gene Product Annotation Gene Ontology Consortium Homepage

Protein Modification Annotation

Type PDB Residue Nr. Description