Macromolecule Annotations for the Entities in PDB 1OJD

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A4-289,A402-500 d1ojda1 Alpha and beta proteins (a/b) FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain FAD-linked reductases, N-terminal domain Monoamine oxidase B Human (Homo sapiens) [TaxId: 9606]
A290-401 d1ojda2 Alpha and beta proteins (a+b) FAD-linked reductases, C-terminal domain FAD-linked reductases, C-terminal domain L-aminoacid/polyamine oxidase Monoamine oxidase B Human (Homo sapiens) [TaxId: 9606]
B4-289,B402-497 d1ojdb1 Alpha and beta proteins (a/b) FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain FAD-linked reductases, N-terminal domain Monoamine oxidase B Human (Homo sapiens) [TaxId: 9606]
B290-401 d1ojdb2 Alpha and beta proteins (a+b) FAD-linked reductases, C-terminal domain FAD-linked reductases, C-terminal domain L-aminoacid/polyamine oxidase Monoamine oxidase B Human (Homo sapiens) [TaxId: 9606]
C4-289,C402-501 d1ojdc1 Alpha and beta proteins (a/b) FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain FAD-linked reductases, N-terminal domain Monoamine oxidase B Human (Homo sapiens) [TaxId: 9606]
C290-401 d1ojdc2 Alpha and beta proteins (a+b) FAD-linked reductases, C-terminal domain FAD-linked reductases, C-terminal domain L-aminoacid/polyamine oxidase Monoamine oxidase B Human (Homo sapiens) [TaxId: 9606]
D4-289,D402-497 d1ojdd1 Alpha and beta proteins (a/b) FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain FAD-linked reductases, N-terminal domain Monoamine oxidase B Human (Homo sapiens) [TaxId: 9606]
D290-401 d1ojdd2 Alpha and beta proteins (a+b) FAD-linked reductases, C-terminal domain FAD-linked reductases, C-terminal domain L-aminoacid/polyamine oxidase Monoamine oxidase B Human (Homo sapiens) [TaxId: 9606]
E4-289,E402-501 d1ojde1 Alpha and beta proteins (a/b) FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain FAD-linked reductases, N-terminal domain Monoamine oxidase B Human (Homo sapiens) [TaxId: 9606]
E290-401 d1ojde2 Alpha and beta proteins (a+b) FAD-linked reductases, C-terminal domain FAD-linked reductases, C-terminal domain L-aminoacid/polyamine oxidase Monoamine oxidase B Human (Homo sapiens) [TaxId: 9606]
F4-289,F402-500 d1ojdf1 Alpha and beta proteins (a/b) FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain FAD-linked reductases, N-terminal domain Monoamine oxidase B Human (Homo sapiens) [TaxId: 9606]
F290-401 d1ojdf2 Alpha and beta proteins (a+b) FAD-linked reductases, C-terminal domain FAD-linked reductases, C-terminal domain L-aminoacid/polyamine oxidase Monoamine oxidase B Human (Homo sapiens) [TaxId: 9606]
G4-289,G402-497 d1ojdg1 Alpha and beta proteins (a/b) FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain FAD-linked reductases, N-terminal domain Monoamine oxidase B Human (Homo sapiens) [TaxId: 9606]
G290-401 d1ojdg2 Alpha and beta proteins (a+b) FAD-linked reductases, C-terminal domain FAD-linked reductases, C-terminal domain L-aminoacid/polyamine oxidase Monoamine oxidase B Human (Homo sapiens) [TaxId: 9606]
H4-289,H402-501 d1ojdh1 Alpha and beta proteins (a/b) FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain FAD-linked reductases, N-terminal domain Monoamine oxidase B Human (Homo sapiens) [TaxId: 9606]
H290-401 d1ojdh2 Alpha and beta proteins (a+b) FAD-linked reductases, C-terminal domain FAD-linked reductases, C-terminal domain L-aminoacid/polyamine oxidase Monoamine oxidase B Human (Homo sapiens) [TaxId: 9606]
I4-289,I402-500 d1ojdi1 Alpha and beta proteins (a/b) FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain FAD-linked reductases, N-terminal domain Monoamine oxidase B Human (Homo sapiens) [TaxId: 9606]
I290-401 d1ojdi2 Alpha and beta proteins (a+b) FAD-linked reductases, C-terminal domain FAD-linked reductases, C-terminal domain L-aminoacid/polyamine oxidase Monoamine oxidase B Human (Homo sapiens) [TaxId: 9606]
L4-289,L402-500 d1ojdl1 Alpha and beta proteins (a/b) FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain FAD-linked reductases, N-terminal domain Monoamine oxidase B Human (Homo sapiens) [TaxId: 9606]
L290-401 d1ojdl2 Alpha and beta proteins (a+b) FAD-linked reductases, C-terminal domain FAD-linked reductases, C-terminal domain L-aminoacid/polyamine oxidase Monoamine oxidase B Human (Homo sapiens) [TaxId: 9606]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A1 1ojdA01 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain
A2 1ojdA02 Alpha Beta Alpha-Beta Complex Polyamine Oxidase; Chain A, domain 2
A3 1ojdA03 Mainly Alpha Orthogonal Bundle Guanine Nucleotide Dissociation Inhibitor; domain 1 Guanine Nucleotide Dissociation Inhibitor, domain 1
B1 1ojdB01 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain
B2 1ojdB02 Alpha Beta Alpha-Beta Complex Polyamine Oxidase; Chain A, domain 2
B3 1ojdB03 Mainly Alpha Orthogonal Bundle Guanine Nucleotide Dissociation Inhibitor; domain 1 Guanine Nucleotide Dissociation Inhibitor, domain 1
C1 1ojdC01 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain
C2 1ojdC02 Alpha Beta Alpha-Beta Complex Polyamine Oxidase; Chain A, domain 2
C3 1ojdC03 Mainly Alpha Orthogonal Bundle Guanine Nucleotide Dissociation Inhibitor; domain 1 Guanine Nucleotide Dissociation Inhibitor, domain 1
D1 1ojdD01 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain
D2 1ojdD02 Alpha Beta Alpha-Beta Complex Polyamine Oxidase; Chain A, domain 2
D3 1ojdD03 Mainly Alpha Orthogonal Bundle Guanine Nucleotide Dissociation Inhibitor; domain 1 Guanine Nucleotide Dissociation Inhibitor, domain 1
E1 1ojdE01 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain
E2 1ojdE02 Alpha Beta Alpha-Beta Complex Polyamine Oxidase; Chain A, domain 2
E3 1ojdE03 Mainly Alpha Orthogonal Bundle Guanine Nucleotide Dissociation Inhibitor; domain 1 Guanine Nucleotide Dissociation Inhibitor, domain 1
F1 1ojdF01 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain
F2 1ojdF02 Alpha Beta Alpha-Beta Complex Polyamine Oxidase; Chain A, domain 2
F3 1ojdF03 Mainly Alpha Orthogonal Bundle Guanine Nucleotide Dissociation Inhibitor; domain 1 Guanine Nucleotide Dissociation Inhibitor, domain 1
G1 1ojdG01 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain
G2 1ojdG02 Alpha Beta Alpha-Beta Complex Polyamine Oxidase; Chain A, domain 2
G3 1ojdG03 Mainly Alpha Orthogonal Bundle Guanine Nucleotide Dissociation Inhibitor; domain 1 Guanine Nucleotide Dissociation Inhibitor, domain 1
H1 1ojdH01 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain
H2 1ojdH02 Alpha Beta Alpha-Beta Complex Polyamine Oxidase; Chain A, domain 2
H3 1ojdH03 Mainly Alpha Orthogonal Bundle Guanine Nucleotide Dissociation Inhibitor; domain 1 Guanine Nucleotide Dissociation Inhibitor, domain 1
I1 1ojdI01 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain
I2 1ojdI02 Alpha Beta Alpha-Beta Complex Polyamine Oxidase; Chain A, domain 2
I3 1ojdI03 Mainly Alpha Orthogonal Bundle Guanine Nucleotide Dissociation Inhibitor; domain 1 Guanine Nucleotide Dissociation Inhibitor, domain 1
L1 1ojdL01 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain
L2 1ojdL02 Alpha Beta Alpha-Beta Complex Polyamine Oxidase; Chain A, domain 2
L3 1ojdL03 Mainly Alpha Orthogonal Bundle Guanine Nucleotide Dissociation Inhibitor; domain 1 Guanine Nucleotide Dissociation Inhibitor, domain 1

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF01593 Amino_oxidase Flavin containing amine oxidoreductase Domain This family consists of various amine oxidases, including maze polyamine oxidase (PAO) [1] and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines [2]. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium [3]. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines [1]. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. PFAM PF01593
A PF01593 Amino_oxidase Flavin containing amine oxidoreductase Domain This family consists of various amine oxidases, including maze polyamine oxidase (PAO) [1] and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines [2]. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium [3]. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines [1]. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. PFAM PF01593

Protein Modification Annotation

Type PDB Residue Nr. Description