Macromolecule Annotations for the Entities in PDB 1OH7

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A270-566 d1oh7a1 All alpha proteins DNA repair protein MutS, domain III DNA repair protein MutS, domain III DNA repair protein MutS, domain III DNA repair protein MutS, domain III Escherichia coli [TaxId: 562]
A567-800 d1oh7a2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases ABC transporter ATPase domain-like DNA repair protein MutS, the C-terminal domain Escherichia coli [TaxId: 562]
A117-269 d1oh7a3 Alpha and beta proteins (a/b) Ribonuclease H-like motif DNA repair protein MutS, domain II DNA repair protein MutS, domain II DNA repair protein MutS, domain II Escherichia coli [TaxId: 562]
A2-116 d1oh7a4 Alpha and beta proteins (a+b) MutS N-terminal domain-like DNA repair protein MutS, domain I DNA repair protein MutS, domain I DNA repair protein MutS, domain I Escherichia coli [TaxId: 562]
B270-566 d1oh7b1 All alpha proteins DNA repair protein MutS, domain III DNA repair protein MutS, domain III DNA repair protein MutS, domain III DNA repair protein MutS, domain III Escherichia coli [TaxId: 562]
B567-800 d1oh7b2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases ABC transporter ATPase domain-like DNA repair protein MutS, the C-terminal domain Escherichia coli [TaxId: 562]
B117-269 d1oh7b3 Alpha and beta proteins (a/b) Ribonuclease H-like motif DNA repair protein MutS, domain II DNA repair protein MutS, domain II DNA repair protein MutS, domain II Escherichia coli [TaxId: 562]
B14-116 d1oh7b4 Alpha and beta proteins (a+b) MutS N-terminal domain-like DNA repair protein MutS, domain I DNA repair protein MutS, domain I DNA repair protein MutS, domain I Escherichia coli [TaxId: 562]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF01624 MutS_I MutS domain I Domain This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF05192 and Pfam:PF05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. The aligned region corresponds with globular domain I, which is involved in DNA binding, in Thermus aquaticus MutS as characterised in [4]. PFAM PF01624
A PF05192 MutS_III MutS domain III Domain This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [4]. PFAM PF05192
A PF05190 MutS_IV MutS family domain IV Domain This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF01624, Pfam:PF05188, Pfam:PF05192 and Pfam:PF00488. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. The aligned region corresponds in part with globular domain IV, which is involved in DNA binding, in Thermus aquaticus MutS as characterised in [4]. PFAM PF05190
A PF00488 MutS_V MutS domain V Domain This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF01624, Pfam:PF05188, Pfam:PF05192 and Pfam:PF05190. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. The aligned region corresponds with domain V of Thermus aquaticus MutS as characterised in [4], which contains a Walker A motif, and is structurally similar to the ATPase domain of ABC transporters. PFAM PF00488
A PF05188 MutS_II MutS domain II Domain This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF00488, Pfam:PF01624, Pfam:PF05192 and Pfam:PF05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. This domain corresponds to domain II in Thermus aquaticus MutS as characterised in [4], and has similarity resembles RNAse-H-like domains (see Pfam:PF00075). PFAM PF05188

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,B DNA MISMATCH REPAIR PROTEIN MUTS (1OH7:A,B)
E 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*GP*TP*CP*AP*GP*CP*GP*TP *CP*CP*TP*AP*T)- 3' (1OH7:E)
  • none
  • none
  • none
F 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP *GP*AP*CP*AP*CP*TP*GP*GP*TP*GP*CP*GP*TP*GP*GP *CP*AP*GP*CP*T)- 3' (1OH7:F)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description