Macromolecule Annotations for the Entities in PDB 1OGY

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A682-801 d1ogya1 All beta proteins Double psi beta-barrel ADC-like Formate dehydrogenase/DMSO reductase, C-terminal domain Periplasmic nitrate reductase alpha chain, NapA Rhodobacter sphaeroides [TaxId: 1063]
A12-681 d1ogya2 Alpha and beta proteins (a/b) Formate dehydrogenase/DMSO reductase, domains 1- 3 Formate dehydrogenase/DMSO reductase, domains 1- 3 Formate dehydrogenase/DMSO reductase, domains 1- 3 Periplasmic nitrate reductase alpha chain Rhodobacter sphaeroides [TaxId: 1063]
B d1ogyb_ All alpha proteins Multiheme cytochromes Multiheme cytochromes Di-heme elbow motif Periplasmic nitrate reductase subunit NapB Rhodobacter sphaeroides [TaxId: 1063]
C682-801 d1ogyc1 All beta proteins Double psi beta-barrel ADC-like Formate dehydrogenase/DMSO reductase, C-terminal domain Periplasmic nitrate reductase alpha chain, NapA Rhodobacter sphaeroides [TaxId: 1063]
C12-681 d1ogyc2 Alpha and beta proteins (a/b) Formate dehydrogenase/DMSO reductase, domains 1- 3 Formate dehydrogenase/DMSO reductase, domains 1- 3 Formate dehydrogenase/DMSO reductase, domains 1- 3 Periplasmic nitrate reductase alpha chain Rhodobacter sphaeroides [TaxId: 1063]
D d1ogyd_ All alpha proteins Multiheme cytochromes Multiheme cytochromes Di-heme elbow motif Periplasmic nitrate reductase subunit NapB Rhodobacter sphaeroides [TaxId: 1063]
E682-801 d1ogye1 All beta proteins Double psi beta-barrel ADC-like Formate dehydrogenase/DMSO reductase, C-terminal domain Periplasmic nitrate reductase alpha chain, NapA Rhodobacter sphaeroides [TaxId: 1063]
E12-681 d1ogye2 Alpha and beta proteins (a/b) Formate dehydrogenase/DMSO reductase, domains 1- 3 Formate dehydrogenase/DMSO reductase, domains 1- 3 Formate dehydrogenase/DMSO reductase, domains 1- 3 Periplasmic nitrate reductase alpha chain Rhodobacter sphaeroides [TaxId: 1063]
F d1ogyf_ All alpha proteins Multiheme cytochromes Multiheme cytochromes Di-heme elbow motif Periplasmic nitrate reductase subunit NapB Rhodobacter sphaeroides [TaxId: 1063]
G682-801 d1ogyg1 All beta proteins Double psi beta-barrel ADC-like Formate dehydrogenase/DMSO reductase, C-terminal domain Periplasmic nitrate reductase alpha chain, NapA Rhodobacter sphaeroides [TaxId: 1063]
G12-681 d1ogyg2 Alpha and beta proteins (a/b) Formate dehydrogenase/DMSO reductase, domains 1- 3 Formate dehydrogenase/DMSO reductase, domains 1- 3 Formate dehydrogenase/DMSO reductase, domains 1- 3 Periplasmic nitrate reductase alpha chain Rhodobacter sphaeroides [TaxId: 1063]
H d1ogyh_ All alpha proteins Multiheme cytochromes Multiheme cytochromes Di-heme elbow motif Periplasmic nitrate reductase subunit NapB Rhodobacter sphaeroides [TaxId: 1063]
I682-801 d1ogyi1 All beta proteins Double psi beta-barrel ADC-like Formate dehydrogenase/DMSO reductase, C-terminal domain Periplasmic nitrate reductase alpha chain, NapA Rhodobacter sphaeroides [TaxId: 1063]
I12-681 d1ogyi2 Alpha and beta proteins (a/b) Formate dehydrogenase/DMSO reductase, domains 1- 3 Formate dehydrogenase/DMSO reductase, domains 1- 3 Formate dehydrogenase/DMSO reductase, domains 1- 3 Periplasmic nitrate reductase alpha chain Rhodobacter sphaeroides [TaxId: 1063]
J d1ogyj_ All alpha proteins Multiheme cytochromes Multiheme cytochromes Di-heme elbow motif Periplasmic nitrate reductase subunit NapB Rhodobacter sphaeroides [TaxId: 1063]
K682-801 d1ogyk1 All beta proteins Double psi beta-barrel ADC-like Formate dehydrogenase/DMSO reductase, C-terminal domain Periplasmic nitrate reductase alpha chain, NapA Rhodobacter sphaeroides [TaxId: 1063]
K12-681 d1ogyk2 Alpha and beta proteins (a/b) Formate dehydrogenase/DMSO reductase, domains 1- 3 Formate dehydrogenase/DMSO reductase, domains 1- 3 Formate dehydrogenase/DMSO reductase, domains 1- 3 Periplasmic nitrate reductase alpha chain Rhodobacter sphaeroides [TaxId: 1063]
L d1ogyl_ All alpha proteins Multiheme cytochromes Multiheme cytochromes Di-heme elbow motif Periplasmic nitrate reductase subunit NapB Rhodobacter sphaeroides [TaxId: 1063]
M682-801 d1ogym1 All beta proteins Double psi beta-barrel ADC-like Formate dehydrogenase/DMSO reductase, C-terminal domain Periplasmic nitrate reductase alpha chain, NapA Rhodobacter sphaeroides [TaxId: 1063]
M12-681 d1ogym2 Alpha and beta proteins (a/b) Formate dehydrogenase/DMSO reductase, domains 1- 3 Formate dehydrogenase/DMSO reductase, domains 1- 3 Formate dehydrogenase/DMSO reductase, domains 1- 3 Periplasmic nitrate reductase alpha chain Rhodobacter sphaeroides [TaxId: 1063]
N d1ogyn_ All alpha proteins Multiheme cytochromes Multiheme cytochromes Di-heme elbow motif Periplasmic nitrate reductase subunit NapB Rhodobacter sphaeroides [TaxId: 1063]
O682-801 d1ogyo1 All beta proteins Double psi beta-barrel ADC-like Formate dehydrogenase/DMSO reductase, C-terminal domain Periplasmic nitrate reductase alpha chain, NapA Rhodobacter sphaeroides [TaxId: 1063]
O12-681 d1ogyo2 Alpha and beta proteins (a/b) Formate dehydrogenase/DMSO reductase, domains 1- 3 Formate dehydrogenase/DMSO reductase, domains 1- 3 Formate dehydrogenase/DMSO reductase, domains 1- 3 Periplasmic nitrate reductase alpha chain Rhodobacter sphaeroides [TaxId: 1063]
P d1ogyp_ All alpha proteins Multiheme cytochromes Multiheme cytochromes Di-heme elbow motif Periplasmic nitrate reductase subunit NapB Rhodobacter sphaeroides [TaxId: 1063]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A2 1ogyA02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
A3 1ogyA03 Alpha Beta 3-Layer(aba) Sandwich Dimethylsulfoxide Reductase; domain 2 Dimethylsulfoxide Reductase, domain 2
A4 1ogyA04 Mainly Beta Beta Barrel Barwin-like endoglucanases
C2 1ogyC02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
C3 1ogyC03 Alpha Beta 3-Layer(aba) Sandwich Dimethylsulfoxide Reductase; domain 2 Dimethylsulfoxide Reductase, domain 2
C4 1ogyC04 Mainly Beta Beta Barrel Barwin-like endoglucanases
E2 1ogyE02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
E3 1ogyE03 Alpha Beta 3-Layer(aba) Sandwich Dimethylsulfoxide Reductase; domain 2 Dimethylsulfoxide Reductase, domain 2
E4 1ogyE04 Mainly Beta Beta Barrel Barwin-like endoglucanases
G2 1ogyG02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
G3 1ogyG03 Alpha Beta 3-Layer(aba) Sandwich Dimethylsulfoxide Reductase; domain 2 Dimethylsulfoxide Reductase, domain 2
G4 1ogyG04 Mainly Beta Beta Barrel Barwin-like endoglucanases
I2 1ogyI02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
I3 1ogyI03 Alpha Beta 3-Layer(aba) Sandwich Dimethylsulfoxide Reductase; domain 2 Dimethylsulfoxide Reductase, domain 2
I4 1ogyI04 Mainly Beta Beta Barrel Barwin-like endoglucanases
K2 1ogyK02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
K3 1ogyK03 Alpha Beta 3-Layer(aba) Sandwich Dimethylsulfoxide Reductase; domain 2 Dimethylsulfoxide Reductase, domain 2
K4 1ogyK04 Mainly Beta Beta Barrel Barwin-like endoglucanases
M2 1ogyM02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
M3 1ogyM03 Alpha Beta 3-Layer(aba) Sandwich Dimethylsulfoxide Reductase; domain 2 Dimethylsulfoxide Reductase, domain 2
M4 1ogyM04 Mainly Beta Beta Barrel Barwin-like endoglucanases
O2 1ogyO02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
O3 1ogyO03 Alpha Beta 3-Layer(aba) Sandwich Dimethylsulfoxide Reductase; domain 2 Dimethylsulfoxide Reductase, domain 2
O4 1ogyO04 Mainly Beta Beta Barrel Barwin-like endoglucanases

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,C,E,G,I,K,M,O PERIPLASMIC NITRATE REDUCTASE (1OGY:A,C,E,G,I,K,M,O)
B,D,F,H,J,L,N,P DIHEME CYTOCHROME C NAPB MOLECULE: NITRATE REDUCTASE (1OGY:B,D,F,H,J,L,N,P)

Protein Modification Annotation

Type PDB Residue Nr. Description