Macromolecule Annotations for the Entities in PDB 1OCZ

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
H d1oczh_ All alpha proteins Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cow (Bos taurus) [TaxId: 9913]
U d1oczu_ All alpha proteins Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cow (Bos taurus) [TaxId: 9913]
E d1ocze_ All alpha proteins alpha-alpha superhelix Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E Cow (Bos taurus) [TaxId: 9913]
R d1oczr_ All alpha proteins alpha-alpha superhelix Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E Cow (Bos taurus) [TaxId: 9913]
B91-227 d1oczb1 All beta proteins Cupredoxin-like Cupredoxins Periplasmic domain of cytochrome c oxidase subunit II Cytochrome c oxidase Cow (Bos taurus) [TaxId: 9913]
O91-227 d1oczo1 All beta proteins Cupredoxin-like Cupredoxins Periplasmic domain of cytochrome c oxidase subunit II Cytochrome c oxidase Cow (Bos taurus) [TaxId: 9913]
A d1ocza_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Mitochondrial cytochrome c oxidase, subunit I Cow (Bos taurus) [TaxId: 9913]
B1-90 d1oczb2 Membrane and cell surface proteins and peptides Transmembrane helix hairpin Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region Mitochondrial cytochrome c oxidase, subunit II Cow (Bos taurus) [TaxId: 9913]
C d1oczc_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Mitochondrial cytochrome c oxidase, subunit III Cow (Bos taurus) [TaxId: 9913]
D d1oczd_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Cow (Bos taurus) [TaxId: 9913]
G d1oczg_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Cow (Bos taurus) [TaxId: 9913]
I d1oczi_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Cow (Bos taurus) [TaxId: 9913]
J d1oczj_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Cow (Bos taurus) [TaxId: 9913]
K d1oczk_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Cow (Bos taurus) [TaxId: 9913]
L d1oczl_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Cow (Bos taurus) [TaxId: 9913]
M d1oczm_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Cow (Bos taurus) [TaxId: 9913]
N d1oczn_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Mitochondrial cytochrome c oxidase, subunit I Cow (Bos taurus) [TaxId: 9913]
O1-90 d1oczo2 Membrane and cell surface proteins and peptides Transmembrane helix hairpin Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region Mitochondrial cytochrome c oxidase, subunit II Cow (Bos taurus) [TaxId: 9913]
P d1oczp_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Mitochondrial cytochrome c oxidase, subunit III Cow (Bos taurus) [TaxId: 9913]
Q d1oczq_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Cow (Bos taurus) [TaxId: 9913]
T d1oczt_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Cow (Bos taurus) [TaxId: 9913]
V d1oczv_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Cow (Bos taurus) [TaxId: 9913]
W d1oczw_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Cow (Bos taurus) [TaxId: 9913]
X d1oczx_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Cow (Bos taurus) [TaxId: 9913]
Y d1oczy_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Cow (Bos taurus) [TaxId: 9913]
Z d1oczz_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Cow (Bos taurus) [TaxId: 9913]
F d1oczf_ Small proteins Rubredoxin-like Rubredoxin-like Cytochrome c oxidase Subunit F Cytochrome c oxidase Subunit F Cow (Bos taurus) [TaxId: 9913]
S d1oczs_ Small proteins Rubredoxin-like Rubredoxin-like Cytochrome c oxidase Subunit F Cytochrome c oxidase Subunit F Cow (Bos taurus) [TaxId: 9913]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A 1oczA00 Mainly Alpha Up-down Bundle Cytochrome C Oxidase; Chain A Cytochrome C Oxidase, chain A
B1 1oczB01 Mainly Alpha Orthogonal Bundle Helix Hairpins
B2 1oczB02 Mainly Beta Sandwich Immunoglobulin-like Cupredoxins - blue copper proteins
C1 1oczC01 Mainly Alpha Orthogonal Bundle Helix Hairpins
C2 1oczC02 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A)
D 1oczD00 Mainly Alpha Orthogonal Bundle Cytochrome C Oxidase; Chain D Cytochrome C Oxidase, chain D
E 1oczE00 Mainly Alpha Alpha Horseshoe Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
F 1oczF00 Mainly Beta Sandwich Cytochrome C Oxidase; Chain F Cytochrome C Oxidase, chain F
G 1oczG00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain G Cytochrome C Oxidase, chain G
H 1oczH00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Cytochrome C oxidase subunit h
I 1oczI00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain I Cytochrome C Oxidase, chain I
J 1oczJ00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain J Cytochrome C Oxidase, chain J
K 1oczK00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain K Cytochrome C Oxidase, chain K
L 1oczL00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain L Cytochrome C Oxidase, chain L
M 1oczM00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain M Cytochrome C Oxidase, chain M
N 1oczN00 Mainly Alpha Up-down Bundle Cytochrome C Oxidase; Chain A Cytochrome C Oxidase, chain A
O1 1oczO01 Mainly Alpha Orthogonal Bundle Helix Hairpins
O2 1oczO02 Mainly Beta Sandwich Immunoglobulin-like Cupredoxins - blue copper proteins
P1 1oczP01 Mainly Alpha Orthogonal Bundle Helix Hairpins
P2 1oczP02 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A)
Q 1oczQ00 Mainly Alpha Orthogonal Bundle Cytochrome C Oxidase; Chain D Cytochrome C Oxidase, chain D
R 1oczR00 Mainly Alpha Alpha Horseshoe Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
S 1oczS00 Mainly Beta Sandwich Cytochrome C Oxidase; Chain F Cytochrome C Oxidase, chain F
T 1oczT00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain G Cytochrome C Oxidase, chain G
U 1oczU00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Cytochrome C oxidase subunit h
V 1oczV00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain I Cytochrome C Oxidase, chain I
W 1oczW00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain J Cytochrome C Oxidase, chain J
X 1oczX00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain K Cytochrome C Oxidase, chain K
Y 1oczY00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain L Cytochrome C Oxidase, chain L
Z 1oczZ00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain M Cytochrome C Oxidase, chain M

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,N CYTOCHROME C OXIDASE (1OCZ:A,N)
B,O CYTOCHROME C OXIDASE (1OCZ:B,O)
C,P CYTOCHROME C OXIDASE (1OCZ:C,P)
D,Q CYTOCHROME C OXIDASE (1OCZ:D,Q)
  • none
  • none
E,R CYTOCHROME C OXIDASE (1OCZ:E,R)
  • none
F,S CYTOCHROME C OXIDASE (1OCZ:F,S)
  • none
G,T CYTOCHROME C OXIDASE (1OCZ:G,T)
  • none
H,U CYTOCHROME C OXIDASE (1OCZ:H,U)
  • none
I,V CYTOCHROME C OXIDASE (1OCZ:I,V)
J,W CYTOCHROME C OXIDASE (1OCZ:J,W)
  • none
K,X CYTOCHROME C OXIDASE (1OCZ:K,X)
  • none
L,Y CYTOCHROME C OXIDASE (1OCZ:L,Y)
  • none
  • none
M,Z CYTOCHROME C OXIDASE (1OCZ:M,Z)
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description