Macromolecule Annotations for the Entities in PDB 1OCO

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
H d1ocoh_ All alpha proteins Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cow (Bos taurus) [TaxId: 9913]
U d1ocou_ All alpha proteins Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cow (Bos taurus) [TaxId: 9913]
E d1ocoe_ All alpha proteins alpha-alpha superhelix Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E Cow (Bos taurus) [TaxId: 9913]
R d1ocor_ All alpha proteins alpha-alpha superhelix Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E Cow (Bos taurus) [TaxId: 9913]
B91-227 d1ocob1 All beta proteins Cupredoxin-like Cupredoxins Periplasmic domain of cytochrome c oxidase subunit II Cytochrome c oxidase Cow (Bos taurus) [TaxId: 9913]
O91-227 d1ocoo1 All beta proteins Cupredoxin-like Cupredoxins Periplasmic domain of cytochrome c oxidase subunit II Cytochrome c oxidase Cow (Bos taurus) [TaxId: 9913]
A d1ocoa_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Mitochondrial cytochrome c oxidase, subunit I Cow (Bos taurus) [TaxId: 9913]
B1-90 d1ocob2 Membrane and cell surface proteins and peptides Transmembrane helix hairpin Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region Mitochondrial cytochrome c oxidase, subunit II Cow (Bos taurus) [TaxId: 9913]
C d1ococ_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Mitochondrial cytochrome c oxidase, subunit III Cow (Bos taurus) [TaxId: 9913]
D d1ocod_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Cow (Bos taurus) [TaxId: 9913]
G d1ocog_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Cow (Bos taurus) [TaxId: 9913]
I d1ocoi_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Cow (Bos taurus) [TaxId: 9913]
J d1ocoj_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Cow (Bos taurus) [TaxId: 9913]
K d1ocok_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Cow (Bos taurus) [TaxId: 9913]
L d1ocol_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Cow (Bos taurus) [TaxId: 9913]
M d1ocom_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Cow (Bos taurus) [TaxId: 9913]
N d1ocon_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Mitochondrial cytochrome c oxidase, subunit I Cow (Bos taurus) [TaxId: 9913]
O1-90 d1ocoo2 Membrane and cell surface proteins and peptides Transmembrane helix hairpin Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region Mitochondrial cytochrome c oxidase, subunit II Cow (Bos taurus) [TaxId: 9913]
P d1ocop_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Mitochondrial cytochrome c oxidase, subunit III Cow (Bos taurus) [TaxId: 9913]
Q d1ocoq_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Cow (Bos taurus) [TaxId: 9913]
T d1ocot_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Cow (Bos taurus) [TaxId: 9913]
V d1ocov_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Cow (Bos taurus) [TaxId: 9913]
W d1ocow_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Cow (Bos taurus) [TaxId: 9913]
X d1ocox_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Cow (Bos taurus) [TaxId: 9913]
Y d1ocoy_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Cow (Bos taurus) [TaxId: 9913]
Z d1ocoz_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Cow (Bos taurus) [TaxId: 9913]
F d1ocof_ Small proteins Rubredoxin-like Rubredoxin-like Cytochrome c oxidase Subunit F Cytochrome c oxidase Subunit F Cow (Bos taurus) [TaxId: 9913]
S d1ocos_ Small proteins Rubredoxin-like Rubredoxin-like Cytochrome c oxidase Subunit F Cytochrome c oxidase Subunit F Cow (Bos taurus) [TaxId: 9913]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A 1ocoA00 Mainly Alpha Up-down Bundle Cytochrome C Oxidase; Chain A Cytochrome C Oxidase, chain A
B1 1ocoB01 Mainly Alpha Orthogonal Bundle Helix Hairpins
B2 1ocoB02 Mainly Beta Sandwich Immunoglobulin-like Cupredoxins - blue copper proteins
C1 1ocoC01 Mainly Alpha Orthogonal Bundle Helix Hairpins
C2 1ocoC02 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A)
D 1ocoD00 Mainly Alpha Orthogonal Bundle Cytochrome C Oxidase; Chain D Cytochrome C Oxidase, chain D
E 1ocoE00 Mainly Alpha Alpha Horseshoe Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
F 1ocoF00 Mainly Beta Sandwich Cytochrome C Oxidase; Chain F Cytochrome C Oxidase, chain F
G 1ocoG00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain G Cytochrome C Oxidase, chain G
H 1ocoH00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Cytochrome C oxidase subunit h
I 1ocoI00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain I Cytochrome C Oxidase, chain I
J 1ocoJ00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain J Cytochrome C Oxidase, chain J
K 1ocoK00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain K Cytochrome C Oxidase, chain K
L 1ocoL00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain L Cytochrome C Oxidase, chain L
M 1ocoM00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain M Cytochrome C Oxidase, chain M
N 1ocoN00 Mainly Alpha Up-down Bundle Cytochrome C Oxidase; Chain A Cytochrome C Oxidase, chain A
O1 1ocoO01 Mainly Alpha Orthogonal Bundle Helix Hairpins
O2 1ocoO02 Mainly Beta Sandwich Immunoglobulin-like Cupredoxins - blue copper proteins
P1 1ocoP01 Mainly Alpha Orthogonal Bundle Helix Hairpins
P2 1ocoP02 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A)
Q 1ocoQ00 Mainly Alpha Orthogonal Bundle Cytochrome C Oxidase; Chain D Cytochrome C Oxidase, chain D
R 1ocoR00 Mainly Alpha Alpha Horseshoe Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
S 1ocoS00 Mainly Beta Sandwich Cytochrome C Oxidase; Chain F Cytochrome C Oxidase, chain F
T 1ocoT00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain G Cytochrome C Oxidase, chain G
U 1ocoU00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Cytochrome C oxidase subunit h
V 1ocoV00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain I Cytochrome C Oxidase, chain I
W 1ocoW00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain J Cytochrome C Oxidase, chain J
X 1ocoX00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain K Cytochrome C Oxidase, chain K
Y 1ocoY00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain L Cytochrome C Oxidase, chain L
Z 1ocoZ00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain M Cytochrome C Oxidase, chain M

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,N CYTOCHROME C OXIDASE (1OCO:A,N)
B,O CYTOCHROME C OXIDASE (1OCO:B,O)
C,P CYTOCHROME C OXIDASE (1OCO:C,P)
D,Q CYTOCHROME C OXIDASE (1OCO:D,Q)
  • none
  • none
E,R CYTOCHROME C OXIDASE (1OCO:E,R)
  • none
F,S CYTOCHROME C OXIDASE (1OCO:F,S)
  • none
G,T CYTOCHROME C OXIDASE (1OCO:G,T)
  • none
H,U CYTOCHROME C OXIDASE (1OCO:H,U)
I,V CYTOCHROME C OXIDASE (1OCO:I,V)
J,W CYTOCHROME C OXIDASE (1OCO:J,W)
  • none
K,X CYTOCHROME C OXIDASE (1OCO:K,X)
  • none
L,Y CYTOCHROME C OXIDASE (1OCO:L,Y)
  • none
  • none
M,Z CYTOCHROME C OXIDASE (1OCO:M,Z)
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description