Macromolecule Annotations for the Entities in PDB 1OCO

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
H d1ocoh_ All alpha proteins Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cow (Bos taurus) [TaxId: 9913]
U d1ocou_ All alpha proteins Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cow (Bos taurus) [TaxId: 9913]
E d1ocoe_ All alpha proteins alpha-alpha superhelix Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E Cow (Bos taurus) [TaxId: 9913]
R d1ocor_ All alpha proteins alpha-alpha superhelix Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E Cow (Bos taurus) [TaxId: 9913]
B91-227 d1ocob1 All beta proteins Cupredoxin-like Cupredoxins Periplasmic domain of cytochrome c oxidase subunit II Cytochrome c oxidase Cow (Bos taurus) [TaxId: 9913]
O91-227 d1ocoo1 All beta proteins Cupredoxin-like Cupredoxins Periplasmic domain of cytochrome c oxidase subunit II Cytochrome c oxidase Cow (Bos taurus) [TaxId: 9913]
A d1ocoa_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Mitochondrial cytochrome c oxidase, subunit I Cow (Bos taurus) [TaxId: 9913]
B1-90 d1ocob2 Membrane and cell surface proteins and peptides Transmembrane helix hairpin Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region Mitochondrial cytochrome c oxidase, subunit II Cow (Bos taurus) [TaxId: 9913]
C d1ococ_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Mitochondrial cytochrome c oxidase, subunit III Cow (Bos taurus) [TaxId: 9913]
D d1ocod_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Cow (Bos taurus) [TaxId: 9913]
G d1ocog_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Cow (Bos taurus) [TaxId: 9913]
I d1ocoi_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Cow (Bos taurus) [TaxId: 9913]
J d1ocoj_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Cow (Bos taurus) [TaxId: 9913]
K d1ocok_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Cow (Bos taurus) [TaxId: 9913]
L d1ocol_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Cow (Bos taurus) [TaxId: 9913]
M d1ocom_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Cow (Bos taurus) [TaxId: 9913]
N d1ocon_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Mitochondrial cytochrome c oxidase, subunit I Cow (Bos taurus) [TaxId: 9913]
O1-90 d1ocoo2 Membrane and cell surface proteins and peptides Transmembrane helix hairpin Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region Mitochondrial cytochrome c oxidase, subunit II Cow (Bos taurus) [TaxId: 9913]
P d1ocop_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Mitochondrial cytochrome c oxidase, subunit III Cow (Bos taurus) [TaxId: 9913]
Q d1ocoq_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Cow (Bos taurus) [TaxId: 9913]
T d1ocot_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Cow (Bos taurus) [TaxId: 9913]
V d1ocov_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Cow (Bos taurus) [TaxId: 9913]
W d1ocow_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Cow (Bos taurus) [TaxId: 9913]
X d1ocox_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Cow (Bos taurus) [TaxId: 9913]
Y d1ocoy_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Cow (Bos taurus) [TaxId: 9913]
Z d1ocoz_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Cow (Bos taurus) [TaxId: 9913]
F d1ocof_ Small proteins Rubredoxin-like Rubredoxin-like Cytochrome c oxidase Subunit F Cytochrome c oxidase Subunit F Cow (Bos taurus) [TaxId: 9913]
S d1ocos_ Small proteins Rubredoxin-like Rubredoxin-like Cytochrome c oxidase Subunit F Cytochrome c oxidase Subunit F Cow (Bos taurus) [TaxId: 9913]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A 1ocoA00 Mainly Alpha Up-down Bundle Cytochrome C Oxidase; Chain A Cytochrome C Oxidase, chain A
B1 1ocoB01 Mainly Alpha Orthogonal Bundle Helix Hairpins
B2 1ocoB02 Mainly Beta Sandwich Immunoglobulin-like Cupredoxins - blue copper proteins
C1 1ocoC01 Mainly Alpha Orthogonal Bundle Helix Hairpins
C2 1ocoC02 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A)
D 1ocoD00 Mainly Alpha Orthogonal Bundle Cytochrome C Oxidase; Chain D Cytochrome C Oxidase, chain D
E 1ocoE00 Mainly Alpha Alpha Horseshoe Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
F 1ocoF00 Mainly Beta Sandwich Cytochrome C Oxidase; Chain F Cytochrome C Oxidase, chain F
G 1ocoG00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain G Cytochrome C Oxidase, chain G
H 1ocoH00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Cytochrome C oxidase subunit h
I 1ocoI00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain I Cytochrome C Oxidase, chain I
J 1ocoJ00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain J Cytochrome C Oxidase, chain J
K 1ocoK00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain K Cytochrome C Oxidase, chain K
L 1ocoL00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain L Cytochrome C Oxidase, chain L
M 1ocoM00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain M Cytochrome C Oxidase, chain M
N 1ocoN00 Mainly Alpha Up-down Bundle Cytochrome C Oxidase; Chain A Cytochrome C Oxidase, chain A
O1 1ocoO01 Mainly Alpha Orthogonal Bundle Helix Hairpins
O2 1ocoO02 Mainly Beta Sandwich Immunoglobulin-like Cupredoxins - blue copper proteins
P1 1ocoP01 Mainly Alpha Orthogonal Bundle Helix Hairpins
P2 1ocoP02 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A)
Q 1ocoQ00 Mainly Alpha Orthogonal Bundle Cytochrome C Oxidase; Chain D Cytochrome C Oxidase, chain D
R 1ocoR00 Mainly Alpha Alpha Horseshoe Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
S 1ocoS00 Mainly Beta Sandwich Cytochrome C Oxidase; Chain F Cytochrome C Oxidase, chain F
T 1ocoT00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain G Cytochrome C Oxidase, chain G
U 1ocoU00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Cytochrome C oxidase subunit h
V 1ocoV00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain I Cytochrome C Oxidase, chain I
W 1ocoW00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain J Cytochrome C Oxidase, chain J
X 1ocoX00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain K Cytochrome C Oxidase, chain K
Y 1ocoY00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain L Cytochrome C Oxidase, chain L
Z 1ocoZ00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain M Cytochrome C Oxidase, chain M

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
F PF01215 COX5B Cytochrome c oxidase subunit Vb Domain PFAM PF01215
B PF00116 COX2 Cytochrome C oxidase subunit II, periplasmic domain Domain PFAM PF00116
A PF00115 COX1 Cytochrome C and Quinol oxidase polypeptide I Family
I PF02937 COX6C Cytochrome c oxidase subunit VIc Family
G PF02046 COX6A Cytochrome c oxidase subunit VIa Family
K PF05392 COX7B Cytochrome C oxidase chain VIIB Family
L PF02935 COX7C Cytochrome c oxidase subunit VIIc Family
C PF00510 COX3 Cytochrome c oxidase subunit III Family
E PF02284 COX5A Cytochrome c oxidase subunit Va Domain Cytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit Va. PFAM PF02284
J PF02238 COX7a Cytochrome c oxidase subunit VIIa Family
B PF02790 COX2_TM Cytochrome C oxidase subunit II, transmembrane domain Family
M PF02285 COX8 Cytochrome oxidase c subunit VIII Family
D PF02936 COX4 Cytochrome c oxidase subunit IV Family
H PF02297 COX6B Cytochrome oxidase c subunit VIb Domain Cytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of the potentially heme-binding subunit IVb of the oxidase. PFAM PF02297

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,N CYTOCHROME C OXIDASE (1OCO:A,N)
B,O CYTOCHROME C OXIDASE (1OCO:B,O)
C,P CYTOCHROME C OXIDASE (1OCO:C,P)
D,Q CYTOCHROME C OXIDASE (1OCO:D,Q)
  • none
  • none
E,R CYTOCHROME C OXIDASE (1OCO:E,R)
  • none
F,S CYTOCHROME C OXIDASE (1OCO:F,S)
  • none
G,T CYTOCHROME C OXIDASE (1OCO:G,T)
  • none
H,U CYTOCHROME C OXIDASE (1OCO:H,U)
  • none
  • none
  • none
I,V CYTOCHROME C OXIDASE (1OCO:I,V)
J,W CYTOCHROME C OXIDASE (1OCO:J,W)
  • none
K,X CYTOCHROME C OXIDASE (1OCO:K,X)
  • none
L,Y CYTOCHROME C OXIDASE (1OCO:L,Y)
  • none
  • none
M,Z CYTOCHROME C OXIDASE (1OCO:M,Z)
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description