Macromolecule Annotations for the Entities in PDB 1OCC

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
H d1occh_ All alpha proteins Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cow (Bos taurus) [TaxId: 9913]
U d1occu_ All alpha proteins Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cow (Bos taurus) [TaxId: 9913]
E d1occe_ All alpha proteins alpha-alpha superhelix Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E Cow (Bos taurus) [TaxId: 9913]
R d1occr_ All alpha proteins alpha-alpha superhelix Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E Cow (Bos taurus) [TaxId: 9913]
B91-227 d1occb1 All beta proteins Cupredoxin-like Cupredoxins Periplasmic domain of cytochrome c oxidase subunit II Cytochrome c oxidase Cow (Bos taurus) [TaxId: 9913]
O91-227 d1occo1 All beta proteins Cupredoxin-like Cupredoxins Periplasmic domain of cytochrome c oxidase subunit II Cytochrome c oxidase Cow (Bos taurus) [TaxId: 9913]
A d1occa_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Mitochondrial cytochrome c oxidase, subunit I Cow (Bos taurus) [TaxId: 9913]
B1-90 d1occb2 Membrane and cell surface proteins and peptides Transmembrane helix hairpin Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region Mitochondrial cytochrome c oxidase, subunit II Cow (Bos taurus) [TaxId: 9913]
C d1occc_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Mitochondrial cytochrome c oxidase, subunit III Cow (Bos taurus) [TaxId: 9913]
D d1occd_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Cow (Bos taurus) [TaxId: 9913]
G d1occg_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Cow (Bos taurus) [TaxId: 9913]
I d1occi_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Cow (Bos taurus) [TaxId: 9913]
J d1occj_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Cow (Bos taurus) [TaxId: 9913]
K d1occk_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Cow (Bos taurus) [TaxId: 9913]
L d1occl_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Cow (Bos taurus) [TaxId: 9913]
M d1occm_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Cow (Bos taurus) [TaxId: 9913]
N d1occn_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Mitochondrial cytochrome c oxidase, subunit I Cow (Bos taurus) [TaxId: 9913]
O1-90 d1occo2 Membrane and cell surface proteins and peptides Transmembrane helix hairpin Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region Mitochondrial cytochrome c oxidase, subunit II Cow (Bos taurus) [TaxId: 9913]
P d1occp_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Mitochondrial cytochrome c oxidase, subunit III Cow (Bos taurus) [TaxId: 9913]
Q d1occq_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Cow (Bos taurus) [TaxId: 9913]
T d1occt_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Cow (Bos taurus) [TaxId: 9913]
V d1occv_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Cow (Bos taurus) [TaxId: 9913]
W d1occw_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Cow (Bos taurus) [TaxId: 9913]
X d1occx_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Cow (Bos taurus) [TaxId: 9913]
Y d1occy_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Cow (Bos taurus) [TaxId: 9913]
Z d1occz_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Cow (Bos taurus) [TaxId: 9913]
F d1occf_ Small proteins Rubredoxin-like Rubredoxin-like Cytochrome c oxidase Subunit F Cytochrome c oxidase Subunit F Cow (Bos taurus) [TaxId: 9913]
S d1occs_ Small proteins Rubredoxin-like Rubredoxin-like Cytochrome c oxidase Subunit F Cytochrome c oxidase Subunit F Cow (Bos taurus) [TaxId: 9913]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A 1occA00 Mainly Alpha Up-down Bundle Cytochrome C Oxidase; Chain A Cytochrome C Oxidase, chain A
B1 1occB01 Mainly Alpha Orthogonal Bundle Helix Hairpins
B2 1occB02 Mainly Beta Sandwich Immunoglobulin-like Cupredoxins - blue copper proteins
C1 1occC01 Mainly Alpha Orthogonal Bundle Helix Hairpins
C2 1occC02 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A)
D 1occD00 Mainly Alpha Orthogonal Bundle Cytochrome C Oxidase; Chain D Cytochrome C Oxidase, chain D
E 1occE00 Mainly Alpha Alpha Horseshoe Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
F 1occF00 Mainly Beta Sandwich Cytochrome C Oxidase; Chain F Cytochrome C Oxidase, chain F
G 1occG00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain G Cytochrome C Oxidase, chain G
H 1occH00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Cytochrome C oxidase subunit h
I 1occI00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain I Cytochrome C Oxidase, chain I
J 1occJ00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain J Cytochrome C Oxidase, chain J
K 1occK00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain K Cytochrome C Oxidase, chain K
L 1occL00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain L Cytochrome C Oxidase, chain L
M 1occM00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain M Cytochrome C Oxidase, chain M
N 1occN00 Mainly Alpha Up-down Bundle Cytochrome C Oxidase; Chain A Cytochrome C Oxidase, chain A
O1 1occO01 Mainly Alpha Orthogonal Bundle Helix Hairpins
O2 1occO02 Mainly Beta Sandwich Immunoglobulin-like Cupredoxins - blue copper proteins
P1 1occP01 Mainly Alpha Orthogonal Bundle Helix Hairpins
P2 1occP02 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A)
Q 1occQ00 Mainly Alpha Orthogonal Bundle Cytochrome C Oxidase; Chain D Cytochrome C Oxidase, chain D
R 1occR00 Mainly Alpha Alpha Horseshoe Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
S 1occS00 Mainly Beta Sandwich Cytochrome C Oxidase; Chain F Cytochrome C Oxidase, chain F
T 1occT00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain G Cytochrome C Oxidase, chain G
U 1occU00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Cytochrome C oxidase subunit h
V 1occV00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain I Cytochrome C Oxidase, chain I
W 1occW00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain J Cytochrome C Oxidase, chain J
X 1occX00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain K Cytochrome C Oxidase, chain K
Y 1occY00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain L Cytochrome C Oxidase, chain L
Z 1occZ00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain M Cytochrome C Oxidase, chain M

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,N CYTOCHROME C OXIDASE (1OCC:A,N)
B,O CYTOCHROME C OXIDASE (1OCC:B,O)
C,P CYTOCHROME C OXIDASE (1OCC:C,P)
D,Q CYTOCHROME C OXIDASE (1OCC:D,Q)
  • none
  • none
E,R CYTOCHROME C OXIDASE (1OCC:E,R)
  • none
F,S CYTOCHROME C OXIDASE (1OCC:F,S)
  • none
G,T CYTOCHROME C OXIDASE (1OCC:G,T)
  • none
H,U CYTOCHROME C OXIDASE (1OCC:H,U)
I,V CYTOCHROME C OXIDASE (1OCC:I,V)
J,W CYTOCHROME C OXIDASE (1OCC:J,W)
  • none
K,X CYTOCHROME C OXIDASE (1OCC:K,X)
  • none
L,Y CYTOCHROME C OXIDASE (1OCC:L,Y)
  • none
  • none
M,Z CYTOCHROME C OXIDASE (1OCC:M,Z)
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description