Macromolecule Annotations for the Entities in PDB 1OCC

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
H d1occh_ All alpha proteins Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cow (Bos taurus) [TaxId: 9913]
U d1occu_ All alpha proteins Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cow (Bos taurus) [TaxId: 9913]
E d1occe_ All alpha proteins alpha-alpha superhelix Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E Cow (Bos taurus) [TaxId: 9913]
R d1occr_ All alpha proteins alpha-alpha superhelix Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E Cow (Bos taurus) [TaxId: 9913]
B91-227 d1occb1 All beta proteins Cupredoxin-like Cupredoxins Periplasmic domain of cytochrome c oxidase subunit II Cytochrome c oxidase Cow (Bos taurus) [TaxId: 9913]
O91-227 d1occo1 All beta proteins Cupredoxin-like Cupredoxins Periplasmic domain of cytochrome c oxidase subunit II Cytochrome c oxidase Cow (Bos taurus) [TaxId: 9913]
A d1occa_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Mitochondrial cytochrome c oxidase, subunit I Cow (Bos taurus) [TaxId: 9913]
B1-90 d1occb2 Membrane and cell surface proteins and peptides Transmembrane helix hairpin Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region Mitochondrial cytochrome c oxidase, subunit II Cow (Bos taurus) [TaxId: 9913]
C d1occc_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Mitochondrial cytochrome c oxidase, subunit III Cow (Bos taurus) [TaxId: 9913]
D d1occd_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Cow (Bos taurus) [TaxId: 9913]
G d1occg_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Cow (Bos taurus) [TaxId: 9913]
I d1occi_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Cow (Bos taurus) [TaxId: 9913]
J d1occj_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Cow (Bos taurus) [TaxId: 9913]
K d1occk_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Cow (Bos taurus) [TaxId: 9913]
L d1occl_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Cow (Bos taurus) [TaxId: 9913]
M d1occm_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Cow (Bos taurus) [TaxId: 9913]
N d1occn_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Mitochondrial cytochrome c oxidase, subunit I Cow (Bos taurus) [TaxId: 9913]
O1-90 d1occo2 Membrane and cell surface proteins and peptides Transmembrane helix hairpin Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region Mitochondrial cytochrome c oxidase, subunit II Cow (Bos taurus) [TaxId: 9913]
P d1occp_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Mitochondrial cytochrome c oxidase, subunit III Cow (Bos taurus) [TaxId: 9913]
Q d1occq_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Cow (Bos taurus) [TaxId: 9913]
T d1occt_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Cow (Bos taurus) [TaxId: 9913]
V d1occv_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Cow (Bos taurus) [TaxId: 9913]
W d1occw_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Cow (Bos taurus) [TaxId: 9913]
X d1occx_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Cow (Bos taurus) [TaxId: 9913]
Y d1occy_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Cow (Bos taurus) [TaxId: 9913]
Z d1occz_ Membrane and cell surface proteins and peptides Single transmembrane helix Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Cow (Bos taurus) [TaxId: 9913]
F d1occf_ Small proteins Rubredoxin-like Rubredoxin-like Cytochrome c oxidase Subunit F Cytochrome c oxidase Subunit F Cow (Bos taurus) [TaxId: 9913]
S d1occs_ Small proteins Rubredoxin-like Rubredoxin-like Cytochrome c oxidase Subunit F Cytochrome c oxidase Subunit F Cow (Bos taurus) [TaxId: 9913]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A 1occA00 Mainly Alpha Up-down Bundle Cytochrome C Oxidase; Chain A Cytochrome C Oxidase, chain A
B1 1occB01 Mainly Alpha Orthogonal Bundle Helix Hairpins
B2 1occB02 Mainly Beta Sandwich Immunoglobulin-like Cupredoxins - blue copper proteins
C1 1occC01 Mainly Alpha Orthogonal Bundle Helix Hairpins
C2 1occC02 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A)
D 1occD00 Mainly Alpha Orthogonal Bundle Cytochrome C Oxidase; Chain D Cytochrome C Oxidase, chain D
E 1occE00 Mainly Alpha Alpha Horseshoe Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
F 1occF00 Mainly Beta Sandwich Cytochrome C Oxidase; Chain F Cytochrome C Oxidase, chain F
G 1occG00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain G Cytochrome C Oxidase, chain G
H 1occH00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Cytochrome C oxidase subunit h
I 1occI00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain I Cytochrome C Oxidase, chain I
J 1occJ00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain J Cytochrome C Oxidase, chain J
K 1occK00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain K Cytochrome C Oxidase, chain K
L 1occL00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain L Cytochrome C Oxidase, chain L
M 1occM00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain M Cytochrome C Oxidase, chain M
N 1occN00 Mainly Alpha Up-down Bundle Cytochrome C Oxidase; Chain A Cytochrome C Oxidase, chain A
O1 1occO01 Mainly Alpha Orthogonal Bundle Helix Hairpins
O2 1occO02 Mainly Beta Sandwich Immunoglobulin-like Cupredoxins - blue copper proteins
P1 1occP01 Mainly Alpha Orthogonal Bundle Helix Hairpins
P2 1occP02 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A)
Q 1occQ00 Mainly Alpha Orthogonal Bundle Cytochrome C Oxidase; Chain D Cytochrome C Oxidase, chain D
R 1occR00 Mainly Alpha Alpha Horseshoe Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
S 1occS00 Mainly Beta Sandwich Cytochrome C Oxidase; Chain F Cytochrome C Oxidase, chain F
T 1occT00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain G Cytochrome C Oxidase, chain G
U 1occU00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Cytochrome C oxidase subunit h
V 1occV00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain I Cytochrome C Oxidase, chain I
W 1occW00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain J Cytochrome C Oxidase, chain J
X 1occX00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain K Cytochrome C Oxidase, chain K
Y 1occY00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain L Cytochrome C Oxidase, chain L
Z 1occZ00 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain M Cytochrome C Oxidase, chain M

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
B PF00116 COX2 Cytochrome C oxidase subunit II, periplasmic domain Domain PFAM PF00116
C PF00510 COX3 Cytochrome c oxidase subunit III Family
E PF02284 COX5A Cytochrome c oxidase subunit Va Domain Cytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit Va. PFAM PF02284
B PF02790 COX2_TM Cytochrome C oxidase subunit II, transmembrane domain Family
H PF02297 COX6B Cytochrome oxidase c subunit VIb Domain Cytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of the potentially heme-binding subunit IVb of the oxidase. PFAM PF02297
F PF01215 COX5B Cytochrome c oxidase subunit Vb Domain PFAM PF01215
K PF05392 COX7B Cytochrome C oxidase chain VIIB Family
L PF02935 COX7C Cytochrome c oxidase subunit VIIc Family
J PF02238 COX7a Cytochrome c oxidase subunit VIIa Family
G PF02046 COX6A Cytochrome c oxidase subunit VIa Family
I PF02937 COX6C Cytochrome c oxidase subunit VIc Family
A PF00115 COX1 Cytochrome C and Quinol oxidase polypeptide I Family
M PF02285 COX8 Cytochrome oxidase c subunit VIII Family
D PF02936 COX4 Cytochrome c oxidase subunit IV Family

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,N CYTOCHROME C OXIDASE (1OCC:A,N)
B,O CYTOCHROME C OXIDASE (1OCC:B,O)
C,P CYTOCHROME C OXIDASE (1OCC:C,P)
D,Q CYTOCHROME C OXIDASE (1OCC:D,Q)
  • none
  • none
E,R CYTOCHROME C OXIDASE (1OCC:E,R)
  • none
F,S CYTOCHROME C OXIDASE (1OCC:F,S)
  • none
G,T CYTOCHROME C OXIDASE (1OCC:G,T)
  • none
H,U CYTOCHROME C OXIDASE (1OCC:H,U)
I,V CYTOCHROME C OXIDASE (1OCC:I,V)
J,W CYTOCHROME C OXIDASE (1OCC:J,W)
  • none
K,X CYTOCHROME C OXIDASE (1OCC:K,X)
  • none
L,Y CYTOCHROME C OXIDASE (1OCC:L,Y)
  • none
  • none
M,Z CYTOCHROME C OXIDASE (1OCC:M,Z)
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description