Macromolecule Annotations for the Entities in PDB 1OB5

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A213-312 d1ob5a1 All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Elongation factors Elongation factor Tu (EF-Tu), domain 2 Thermus thermophilus [TaxId: 274]
A313-405 d1ob5a2 All beta proteins Elongation factor/aminomethyltransferase common domain EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Elongation factor Tu (EF-Tu) Thermus thermophilus [TaxId: 274]
A9-212 d1ob5a3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases G proteins Elongation factor Tu (EF-Tu), N-terminal (G) domain Thermus thermophilus [TaxId: 274]
C213-312 d1ob5c1 All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Elongation factors Elongation factor Tu (EF-Tu), domain 2 Thermus thermophilus [TaxId: 274]
C313-405 d1ob5c2 All beta proteins Elongation factor/aminomethyltransferase common domain EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Elongation factor Tu (EF-Tu) Thermus thermophilus [TaxId: 274]
C9-212 d1ob5c3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases G proteins Elongation factor Tu (EF-Tu), N-terminal (G) domain Thermus thermophilus [TaxId: 274]
E213-312 d1ob5e1 All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Elongation factors Elongation factor Tu (EF-Tu), domain 2 Thermus thermophilus [TaxId: 274]
E313-405 d1ob5e2 All beta proteins Elongation factor/aminomethyltransferase common domain EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Elongation factor Tu (EF-Tu) Thermus thermophilus [TaxId: 274]
E9-212 d1ob5e3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases G proteins Elongation factor Tu (EF-Tu), N-terminal (G) domain Thermus thermophilus [TaxId: 274]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF00009 GTP_EFTU Elongation factor Tu GTP binding domain Domain This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. PFAM PF00009
A PF03144 GTP_EFTU_D2 Elongation factor Tu domain 2 Domain Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain. PFAM PF03144
A PF03143 GTP_EFTU_D3 Elongation factor Tu C-terminal domain Domain Elongation factor Tu consists of three structural domains, this is the third domain. This domain adopts a beta barrel structure. This the third domain is involved in binding to both charged tRNA [1] and binding to EF-Ts Pfam:PF00889 [2]. PFAM PF03143

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,C,E ELONGATION FACTOR TU (1OB5:A,C,E)
B,D,F TRANSFER-RNA, PHE (1OB5:B,D,F)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description