Macromolecule Annotations for the Entities in PDB 1O0P

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A 1o0pA00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Domain The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. PFAM PF00076

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A Splicing factor U2AF 65 kDa subunit (1O0P:A)
  • none
  • none
B Splicing Factor SF1 (1O0P:B)
  • none
  • none
  • none