Macromolecule Annotations for the Entities in PDB 1NWY

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
1 d1nwy1_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
2 d1nwy2_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
3 d1nwy3_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
4 d1nwy4_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
A d1nwya_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
B d1nwyb_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
C d1nwyc_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
D d1nwyd_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
E d1nwye_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
F d1nwyf_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
G d1nwyg_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
H d1nwyh_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
I d1nwyi_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
J d1nwyj_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
K d1nwyk_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
L d1nwyl_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
M d1nwym_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
N d1nwyn_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
O d1nwyo_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
P d1nwyp_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
Q d1nwyq_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
R d1nwyr_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
S d1nwys_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
T d1nwyt_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
U d1nwyu_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
W d1nwyw_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
X d1nwyx_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
Y d1nwyy_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
Z d1nwyz_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
2 PF00468 Ribosomal_L34 Ribosomal protein L34 Family
S PF00467 KOW KOW motif Family
U PF01016 Ribosomal_L27 Ribosomal L27 protein Family
N PF01245 Ribosomal_L19 Ribosomal protein L19 Family
3 PF01632 Ribosomal_L35p Ribosomal protein L35 Family
H PF00572 Ribosomal_L13 Ribosomal protein L13 Family
4 PF00444 Ribosomal_L36 Ribosomal protein L36 Domain PFAM PF00444
D PF00281 Ribosomal_L5 Ribosomal protein L5 Domain PFAM PF00281
E PF00347 Ribosomal_L6 Ribosomal protein L6 Domain PFAM PF00347
A PF00181 Ribosomal_L2 Ribosomal Proteins L2, RNA binding domain Domain PFAM PF00181
I PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e Domain PFAM PF00238
Q PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e Domain This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. PFAM PF00237
J PF00828 Ribosomal_L18e Ribosomal protein L18e/L15 Family
E PF00347 Ribosomal_L6 Ribosomal protein L6 Domain PFAM PF00347
K PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e Family
O PF00453 Ribosomal_L20 Ribosomal protein L20 Family
X PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e Domain This family includes prokaryotic L30 and eukaryotic L7. PFAM PF00327
D PF00673 Ribosomal_L5_C ribosomal L5P family C-terminus Domain This region is found associated with Pfam:PF00281. PFAM PF00673
L PF01196 Ribosomal_L17 Ribosomal protein L17 Family
G PF03946 Ribosomal_L11_N Ribosomal protein L11, N-terminal domain Domain The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. PFAM PF03946
M PF00861 Ribosomal_L18p Ribosomal L18p/L5e family Family
R PF00276 Ribosomal_L23 Ribosomal protein L23 Family
C PF00573 Ribosomal_L4 Ribosomal protein L4/L1 family Family
B PF00297 Ribosomal_L3 Ribosomal protein L3 Family
P PF00829 Ribosomal_L21p Ribosomal prokaryotic L21 protein Family
Z PF01783 Ribosomal_L32p Ribosomal L32p protein family Family
T PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain Domain This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC proteins. TL5 or CTC are not found in Eukarya or Archaea. In some Bacteria, including E. coli, this ribosomal subunit occurs as a single domain protein (named Ribosomal subunit L25), where the only domain is homologous to TL5 N-terminal domain (hence included in family Pfam:PF01386). The function of the C-terminal domain of TLC is at present unknown. PFAM PF14693
G PF00298 Ribosomal_L11 Ribosomal protein L11, RNA binding domain Domain PFAM PF00298
F PF01281 Ribosomal_L9_N Ribosomal protein L9, N-terminal domain Domain PFAM PF01281
1 PF00471 Ribosomal_L33 Ribosomal protein L33 Family
Y PF01197 Ribosomal_L31 Ribosomal protein L31 Family
A PF03947 Ribosomal_L2_C Ribosomal Proteins L2, C-terminal domain Domain PFAM PF03947
W PF00831 Ribosomal_L29 Ribosomal L29 protein Family
T PF01386 Ribosomal_L25p Ribosomal L25p family Domain Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. PFAM PF01386

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
0 23S RIBOSOMAL RRNA (1NWY:0)
  • none
  • none
  • none
9 5S RIBOSOMAL RRNA (1NWY:9)
  • none
  • none
  • none
A ribosomal protein L2 (1NWY:A)
B ribosomal protein L3 (1NWY:B)
C ribosomal protein L4 (1NWY:C)
D ribosomal protein L5 (1NWY:D)
E ribosomal protein L6 (1NWY:E)
F ribosomal protein L9 (1NWY:F)
G ribosomal protein L11 (1NWY:G)
H ribosomal protein L13 (1NWY:H)
I ribosomal protein L14 (1NWY:I)
J ribosomal protein L15 (1NWY:J)
K ribosomal protein L16 (1NWY:K)
L ribosomal protein L17 (1NWY:L)
M ribosomal protein L18 (1NWY:M)
N ribosomal protein L19 (1NWY:N)
O ribosomal protein L20 (1NWY:O)
P ribosomal protein L21 (1NWY:P)
Q ribosomal protein L22 (1NWY:Q)
R ribosomal protein L23 (1NWY:R)
S ribosomal protein L24 (1NWY:S)
T general stress protein Ctc (1NWY:T)
U ribosomal protein L27 (1NWY:U)
W ribosomal protein L29 (1NWY:W)
X ribosomal protein L30 (1NWY:X)
Y ribosomal protein L31 (1NWY:Y)
Z ribosomal protein L32 (1NWY:Z)
1 ribosomal protein L33 (1NWY:1)
2 ribosomal protein L34 (1NWY:2)
3 ribosomal protein L35 (1NWY:3)
4 ribosomal protein L36 (1NWY:4)

Protein Modification Annotation

Type PDB Residue Nr. Description