Macromolecule Annotations for the Entities in PDB 1NWX

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
1 d1nwx1_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
2 d1nwx2_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
3 d1nwx3_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
4 d1nwx4_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
A d1nwxa_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
B d1nwxb_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
C d1nwxc_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
D d1nwxd_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
E d1nwxe_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
F d1nwxf_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
G d1nwxg_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
H d1nwxh_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
I d1nwxi_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
J d1nwxj_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
K d1nwxk_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
L d1nwxl_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
M d1nwxm_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
N d1nwxn_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
O d1nwxo_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
P d1nwxp_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
Q d1nwxq_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
R d1nwxr_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
S d1nwxs_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
T d1nwxt_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
U d1nwxu_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
W d1nwxw_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
X d1nwxx_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
Y d1nwxy_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]
Z d1nwxz_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Large subunit 50S subunit Deinococcus radiodurans [TaxId: 1299]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
S PF00467 KOW KOW motif Family
N PF01245 Ribosomal_L19 Ribosomal protein L19 Family
Z PF01783 Ribosomal_L32p Ribosomal L32p protein family Family
G PF03946 Ribosomal_L11_N Ribosomal protein L11, N-terminal domain Domain The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. PFAM PF03946
I PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e Domain PFAM PF00238
M PF00861 Ribosomal_L18p Ribosomal L18p/L5e family Family
A PF00181 Ribosomal_L2 Ribosomal Proteins L2, RNA binding domain Domain PFAM PF00181
F PF01281 Ribosomal_L9_N Ribosomal protein L9, N-terminal domain Domain PFAM PF01281
D PF00673 Ribosomal_L5_C ribosomal L5P family C-terminus Domain This region is found associated with Pfam:PF00281. PFAM PF00673
T PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain Domain This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC proteins. TL5 or CTC are not found in Eukarya or Archaea. In some Bacteria, including E. coli, this ribosomal subunit occurs as a single domain protein (named Ribosomal subunit L25), where the only domain is homologous to TL5 N-terminal domain (hence included in family Pfam:PF01386). The function of the C-terminal domain of TLC is at present unknown. PFAM PF14693
E PF00347 Ribosomal_L6 Ribosomal protein L6 Domain PFAM PF00347
Y PF01197 Ribosomal_L31 Ribosomal protein L31 Family
P PF00829 Ribosomal_L21p Ribosomal prokaryotic L21 protein Family
B PF00297 Ribosomal_L3 Ribosomal protein L3 Family
A PF03947 Ribosomal_L2_C Ribosomal Proteins L2, C-terminal domain Domain PFAM PF03947
G PF00298 Ribosomal_L11 Ribosomal protein L11, RNA binding domain Domain PFAM PF00298
X PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e Domain This family includes prokaryotic L30 and eukaryotic L7. PFAM PF00327
D PF00281 Ribosomal_L5 Ribosomal protein L5 Domain PFAM PF00281
J PF00828 Ribosomal_L18e Ribosomal protein L18e/L15 Family
L PF01196 Ribosomal_L17 Ribosomal protein L17 Family
C PF00573 Ribosomal_L4 Ribosomal protein L4/L1 family Family
1 PF00471 Ribosomal_L33 Ribosomal protein L33 Family
W PF00831 Ribosomal_L29 Ribosomal L29 protein Family
2 PF00468 Ribosomal_L34 Ribosomal protein L34 Family
Q PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e Domain This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. PFAM PF00237
4 PF00444 Ribosomal_L36 Ribosomal protein L36 Domain PFAM PF00444
O PF00453 Ribosomal_L20 Ribosomal protein L20 Family
U PF01016 Ribosomal_L27 Ribosomal L27 protein Family
H PF00572 Ribosomal_L13 Ribosomal protein L13 Family
T PF01386 Ribosomal_L25p Ribosomal L25p family Domain Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. PFAM PF01386
R PF00276 Ribosomal_L23 Ribosomal protein L23 Family
E PF00347 Ribosomal_L6 Ribosomal protein L6 Domain PFAM PF00347
3 PF01632 Ribosomal_L35p Ribosomal protein L35 Family

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
0 23S RIBOSOMAL RNA (1NWX:0)
  • none
  • none
  • none
9 5S RIBOSOMAL RNA (1NWX:9)
  • none
  • none
  • none
A ribosomal protein L2 (1NWX:A)
B ribosomal protein L3 (1NWX:B)
C ribosomal protein L4 (1NWX:C)
D ribosomal protein L5 (1NWX:D)
E ribosomal protein L6 (1NWX:E)
F ribosomal protein L9 (1NWX:F)
G ribosomal protein L11 (1NWX:G)
H ribosomal protein L13 (1NWX:H)
I ribosomal protein L14 (1NWX:I)
J ribosomal protein L15 (1NWX:J)
K ribosomal protein L16 (1NWX:K)
L ribosomal protein L17 (1NWX:L)
M ribosomal protein L18 (1NWX:M)
N ribosomal protein L19 (1NWX:N)
O ribosomal protein L20 (1NWX:O)
P ribosomal protein L21 (1NWX:P)
Q ribosomal protein L22 (1NWX:Q)
R ribosomal protein L23 (1NWX:R)
S ribosomal protein L24 (1NWX:S)
T general stress protein Ctc (1NWX:T)
U ribosomal protein L27 (1NWX:U)
W ribosomal protein L29 (1NWX:W)
X ribosomal protein L30 (1NWX:X)
Y ribosomal protein L31 (1NWX:Y)
Z ribosomal protein L32 (1NWX:Z)
1 ribosomal protein L33 (1NWX:1)
2 ribosomal protein L34 (1NWX:2)
3 ribosomal protein L35 (1NWX:3)
4 ribosomal protein L36 (1NWX:4)

Protein Modification Annotation

Type PDB Residue Nr. Description