Macromolecule Annotations for the Entities in PDB 1NVP

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A159-252 d1nvpa1 Alpha and beta proteins (a+b) TBP-like TATA-box binding protein-like TATA-box binding protein (TBP), C-terminal domain TATA-box binding protein (TBP), C-terminal domain Human (Homo sapiens) [TaxId: 9606]
A253-338 d1nvpa2 Alpha and beta proteins (a+b) TBP-like TATA-box binding protein-like TATA-box binding protein (TBP), C-terminal domain TATA-box binding protein (TBP), C-terminal domain Human (Homo sapiens) [TaxId: 9606]
B d1nvpb_ All alpha proteins Transcription factor IIA (TFIIA), alpha-helical domain Transcription factor IIA (TFIIA), alpha-helical domain Transcription factor IIA (TFIIA), alpha-helical domain Large chain TOA1, N-terminal domain Human (Homo sapiens) [TaxId: 9606]
C d1nvpc_ All beta proteins Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Large chain TOA1, C-terminal domain Human (Homo sapiens) [TaxId: 9606]
D3-53 d1nvpd1 All alpha proteins Transcription factor IIA (TFIIA), alpha-helical domain Transcription factor IIA (TFIIA), alpha-helical domain Transcription factor IIA (TFIIA), alpha-helical domain Small chain TOA2, N-terminal domain Human (Homo sapiens) [TaxId: 9606]
D54-99 d1nvpd2 All beta proteins Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Small chain TOA2, C-terminal domain Human (Homo sapiens) [TaxId: 9606]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
D PF02751 TFIIA_gamma_C Transcription initiation factor IIA, gamma subunit Domain Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIA (TFIIA) is a multimeric protein which facilitates the binding of TFIID to the TATA box. The C-terminal domain of the gamma subunit is a 12 stranded beta-barrel. PFAM PF02751
C PF03153 TFIIA Transcription factor IIA, alpha/beta subunit Family
D PF02268 TFIIA_gamma_N Transcription initiation factor IIA, gamma subunit, helical domain Domain Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIA (TFIIA) is a multimeric protein which facilitates the binding of TFIID to the TATA box. The N-terminal domain of the gamma subunit is a 4 helix bundle. PFAM PF02268
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP) Domain PFAM PF00352
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP) Domain PFAM PF00352
B PF03153 TFIIA Transcription factor IIA, alpha/beta subunit Family

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
E 5'-D(*GP*GP*GP*GP*GP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*G)- 3' (1NVP:E)
  • none
  • none
  • none
F 5'-D(*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*CP*CP*CP*CP*CP*C)- 3' (1NVP:F)
  • none
  • none
  • none
A TATA box binding protein (1NVP:A)
  • none
B Transcription initiation factor IIA alpha chain (1NVP:B)
  • none
C Transcription initiation factor IIA beta chain (1NVP:C)
  • none
D Transcription initiation factor IIA gamma chain (1NVP:D)

Protein Modification Annotation

Type PDB Residue Nr. Description