Macromolecule Annotations for the Entities in PDB 1NN8

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
1 d1nn81_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Poliovirus complexed with three domain CD155 Human poliovirus type 1 [TaxId: 12080]
2 d1nn82_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Poliovirus complexed with three domain CD155 Human poliovirus type 1 [TaxId: 12080]
3 d1nn83_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Poliovirus complexed with three domain CD155 Human poliovirus type 1 [TaxId: 12080]
4 d1nn84_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Poliovirus complexed with three domain CD155 Human poliovirus type 1 [TaxId: 12080]
R d1nn8r_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Poliovirus complexed with three domain CD155 Human poliovirus type 1 [TaxId: 12080]
S d1nn8s_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Poliovirus complexed with three domain CD155 Human poliovirus type 1 [TaxId: 12080]
T d1nn8t_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Poliovirus complexed with three domain CD155 Human poliovirus type 1 [TaxId: 12080]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
4 PF02226 Pico_P1A Picornavirus coat protein (VP4) Family
R PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
R PF08205 C2-set_2 CD80-like C2-set immunoglobulin domain Domain These domains belong to the immunoglobulin superfamily. PFAM PF08205
1 PF00073 Rhv picornavirus capsid protein Domain CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur. PFAM PF00073
3 PF00073 Rhv picornavirus capsid protein Domain CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur. PFAM PF00073
2 PF00073 Rhv picornavirus capsid protein Domain CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur. PFAM PF00073

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
R,S,T poliovirus receptor (1NN8:R,S,T)
  • none
  • none
  • none
1 coat protein VP1 (1NN8:1)
  • none
  • none
  • none
2 coat protein VP2 (1NN8:2)
  • none
  • none
  • none
3 coat protein VP3 (1NN8:3)
  • none
  • none
  • none
4 coat protein VP4 (1NN8:4)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description