Macromolecule Annotations for the Entities in PDB 1NL3

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A226-349 d1nl3a1 All alpha proteins Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA Mycobacterium tuberculosis [TaxId: 1773]
A616-835 d1nl3a2 All alpha proteins Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA Mycobacterium tuberculosis [TaxId: 1773]
A-15-225,A350-396 d1nl3a3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Tandem AAA-ATPase domain Translocation ATPase SecA, nucleotide-binding domains Mycobacterium tuberculosis [TaxId: 1773]
A397-615 d1nl3a4 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Tandem AAA-ATPase domain Translocation ATPase SecA, nucleotide-binding domains Mycobacterium tuberculosis [TaxId: 1773]
B226-349 d1nl3b1 All alpha proteins Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA Mycobacterium tuberculosis [TaxId: 1773]
B616-835 d1nl3b2 All alpha proteins Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA Mycobacterium tuberculosis [TaxId: 1773]
B-15-225,B350-396 d1nl3b3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Tandem AAA-ATPase domain Translocation ATPase SecA, nucleotide-binding domains Mycobacterium tuberculosis [TaxId: 1773]
B397-615 d1nl3b4 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Tandem AAA-ATPase domain Translocation ATPase SecA, nucleotide-binding domains Mycobacterium tuberculosis [TaxId: 1773]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF07517 SecA_DEAD SecA DEAD-like domain Domain SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner [1,2]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the Pfam:PF00270 [3]. PFAM PF07517
A PF07516 SecA_SW SecA Wing and Scaffold domain Family
A PF01043 SecA_PP_bind SecA preprotein cross-linking domain Domain The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain [1]. PFAM PF01043

Protein Modification Annotation

Type PDB Residue Nr. Description