Macromolecule Annotations for the Entities in PDB 1NJI

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
1 d1nji1_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37ae Ribosomal protein L37ae Archaeon Haloarcula marismortui [TaxId: 2238]
2 d1nji2_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37e Ribosomal protein L37e Archaeon Haloarcula marismortui [TaxId: 2238]
3 d1nji3_ All alpha proteins Non-globular all-alpha subunits of globular proteins Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e Archaeon Haloarcula marismortui [TaxId: 2238]
4 d1nji4_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L44e Ribosomal protein L44e Archaeon Haloarcula marismortui [TaxId: 2238]
C91-237 d1njic1 All beta proteins SH3-like barrel Translation proteins SH3-like domain C-terminal domain of ribosomal protein L2 C-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
C1-90 d1njic2 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like N-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
D d1njid_ All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 Archaeon Haloarcula marismortui [TaxId: 2238]
E d1njie_ Alpha and beta proteins (a/b) Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Archaeon Haloarcula marismortui [TaxId: 2238]
F d1njif_ Alpha and beta proteins (a+b) RL5-like RL5-like Ribosomal protein L5 Ribosomal protein L5 Archaeon Haloarcula marismortui [TaxId: 2238]
G1-79 d1njig1 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
G80-172 d1njig2 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
H d1njih_ Alpha and beta proteins (a+b) Bacillus chorismate mutase-like L30e-like L30e/L7ae ribosomal proteins Ribosomal protein L7ae Archaeon Haloarcula marismortui [TaxId: 2238]
I d1njii_ Peptides Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Archaeon Haloarcula marismortui [TaxId: 2238]
J d1njij_ Alpha and beta proteins (a+b) alpha/beta-Hammerhead Ribosomal protein L16p/L10e Ribosomal protein L10e Ribosomal protein L10e Archaeon Haloarcula marismortui [TaxId: 2238]
K d1njik_ Alpha and beta proteins (a/b) Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Archaeon Haloarcula marismortui [TaxId: 2238]
L d1njil_ All beta proteins Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Archaeon Haloarcula marismortui [TaxId: 2238]
M d1njim_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L15 (L15p) Archaeon Haloarcula marismortui [TaxId: 2238]
N d1njin_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L15e Ribosomal protein L15e Archaeon Haloarcula marismortui [TaxId: 2238]
O d1njio_ Alpha and beta proteins (a/b) Ribonuclease H-like motif Translational machinery components Ribosomal protein L18 and S11 Ribosomal protein L18 (L18p) Archaeon Haloarcula marismortui [TaxId: 2238]
P d1njip_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L18e Archaeon Haloarcula marismortui [TaxId: 2238]
Q d1njiq_ All alpha proteins Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Archaeon Haloarcula marismortui [TaxId: 2238]
R d1njir_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L21e Archaeon Haloarcula marismortui [TaxId: 2238]
S d1njis_ Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Archaeon Haloarcula marismortui [TaxId: 2238]
T d1njit_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 Archaeon Haloarcula marismortui [TaxId: 2238]
U d1njiu_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L24 (L24p) Archaeon Haloarcula marismortui [TaxId: 2238]
V d1njiv_ Small proteins Glucocorticoid receptor-like (DNA-binding domain) Glucocorticoid receptor-like (DNA-binding domain) Ribosomal protein L24e Ribosomal protein L24e Archaeon Haloarcula marismortui [TaxId: 2238]
W d1njiw_ All alpha proteins Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Archaeon Haloarcula marismortui [TaxId: 2238]
X d1njix_ Alpha and beta proteins (a+b) Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Archaeal L30 (L30a) Archaeon Haloarcula marismortui [TaxId: 2238]
Y d1njiy_ Alpha and beta proteins (a+b) Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Archaeon Haloarcula marismortui [TaxId: 2238]
Z d1njiz_ Alpha and beta proteins (a/b) Barstar-like Ribosomal protein L32e Ribosomal protein L32e Ribosomal protein L32e Archaeon Haloarcula marismortui [TaxId: 2238]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
1 1nji100 Mainly Beta Single Sheet N-terminal domain of TfIIb
2 1nji200 Mainly Beta Single Sheet N-terminal domain of TfIIb
3 1nji300 Mainly Alpha Orthogonal Bundle Atp Synthase Epsilon Chain; Chain: I; Ribosomal protein L39e
4 1nji400 Alpha Beta Roll Nuclear Transport Factor 2; Chain: A,
C1 1njiC01 Mainly Beta Roll SH3 type barrels.
C2 1njiC02 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
C3 1njiC03 Few Secondary Structures Irregular Ribosomal protein L2; domain 3 Ribosomal protein L2, domain 3
D1 1njiD01 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3 Translation factors
D2 1njiD02 Alpha Beta 2-Layer Sandwich Ribosomal Protein L3; Chain: B; domain 2,
D3 1njiD03 Few Secondary Structures Irregular Ribosomal protein L3; domain 3 Ribosomal protein L3, domain 3
E 1njiE00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L4; Chain: A;
F 1njiF00 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A,
G1 1njiG01 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
G2 1njiG02 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
H 1njiH00 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A;
I 1njiI00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A
J 1njiJ00 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3
K 1njiK00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A;
L 1njiL00 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal Protein L14;
M1 1njiM01 Few Secondary Structures Irregular Molecule: Ribosomal Protein L15; Chain: K; domain 1
M2 1njiM02 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
N 1njiN00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal protein L15e Ribosomal protein l15e
O 1njiO00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
P 1njiP00 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
Q1 1njiQ01 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1
Q2 1njiQ02 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
Q3 1njiQ03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces Single Heli x bin
R 1njiR00 Mainly Beta Roll SH3 type barrels. Myosin S1 fragment SH3-like barrel
S 1njiS00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal Protein L22; Chain A
T 1njiT00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
U 1njiU00 Mainly Beta Roll SH3 type barrels.
V 1njiV00 Mainly Beta Roll Ribosomal Protein L24e; Chain: T;
W 1njiW00 Mainly Alpha Orthogonal Bundle Helix Hairpins
X1 1njiX01 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A,
X2 1njiX02 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3
Y 1njiY00 Alpha Beta Roll Ribosomal Protein L31e; Chain: W;

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 23S ribosomal RNA (1NJI:A)
  • none
  • none
  • none
B 5S ribosomal RNA (1NJI:B)
  • none
  • none
  • none
C 50S ribosomal protein L2P (1NJI:C)
D 50S ribosomal protein L3P (1NJI:D)
E 50S ribosomal protein L4E (1NJI:E)
F 50S ribosomal protein L5P (1NJI:F)
G 50S ribosomal protein L6P (1NJI:G)
H 50S ribosomal protein L7Ae (1NJI:H)
I Acidic ribosomal protein P0 homolog (1NJI:I)
J 50S ribosomal protein L10e (1NJI:J)
K 50S ribosomal protein L13P (1NJI:K)
L 50S ribosomal protein L14P (1NJI:L)
M 50S ribosomal protein L15P (1NJI:M)
  • none
N 50S ribosomal protein L15E (1NJI:N)
O 50S ribosomal protein L18P (1NJI:O)
P 50S ribosomal protein L18E (1NJI:P)
Q 50S ribosomal protein L19E (1NJI:Q)
R 50S ribosomal protein L21e (1NJI:R)
S 50S ribosomal protein L22P (1NJI:S)
T 50S ribosomal protein L23P (1NJI:T)
U 50S ribosomal protein L24P (1NJI:U)
V 50S ribosomal protein L24E (1NJI:V)
  • none
W 50S ribosomal protein L29P (1NJI:W)
X 50S ribosomal protein L30P (1NJI:X)
Y 50S ribosomal protein L31E (1NJI:Y)
Z 50S ribosomal protein L32E (1NJI:Z)
1 50S ribosomal protein L37AE (1NJI:1)
2 50S ribosomal protein L37e (1NJI:2)
3 50S ribosomal protein L39e (1NJI:3)
4 50S ribosomal protein L44E (1NJI:4)

Protein Modification Annotation

Type PDB Residue Nr. Description