Macromolecule Annotations for the Entities in PDB 1NJ8

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A268-393 d1nj8a1 Alpha and beta proteins (a/b) Anticodon-binding domain-like Class II aaRS ABD-related Anticodon-binding domain of Class II aaRS Prolyl-tRNA synthetase (ProRS) domain Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
A394-455 d1nj8a2 Alpha and beta proteins (a+b) IF3-like C-terminal domain of ProRS C-terminal domain of ProRS C-terminal domain of ProRS Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
A0-267 d1nj8a3 Alpha and beta proteins (a+b) Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)- like, catalytic domain Prolyl-tRNA synthetase (ProRS) Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
B268-393 d1nj8b1 Alpha and beta proteins (a/b) Anticodon-binding domain-like Class II aaRS ABD-related Anticodon-binding domain of Class II aaRS Prolyl-tRNA synthetase (ProRS) domain Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
B394-455 d1nj8b2 Alpha and beta proteins (a+b) IF3-like C-terminal domain of ProRS C-terminal domain of ProRS C-terminal domain of ProRS Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
B0-267 d1nj8b3 Alpha and beta proteins (a+b) Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)- like, catalytic domain Prolyl-tRNA synthetase (ProRS) Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
C268-393 d1nj8c1 Alpha and beta proteins (a/b) Anticodon-binding domain-like Class II aaRS ABD-related Anticodon-binding domain of Class II aaRS Prolyl-tRNA synthetase (ProRS) domain Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
C394-455 d1nj8c2 Alpha and beta proteins (a+b) IF3-like C-terminal domain of ProRS C-terminal domain of ProRS C-terminal domain of ProRS Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
C0-267 d1nj8c3 Alpha and beta proteins (a+b) Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)- like, catalytic domain Prolyl-tRNA synthetase (ProRS) Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
D268-393 d1nj8d1 Alpha and beta proteins (a/b) Anticodon-binding domain-like Class II aaRS ABD-related Anticodon-binding domain of Class II aaRS Prolyl-tRNA synthetase (ProRS) domain Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
D394-455 d1nj8d2 Alpha and beta proteins (a+b) IF3-like C-terminal domain of ProRS C-terminal domain of ProRS C-terminal domain of ProRS Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
D0-267 d1nj8d3 Alpha and beta proteins (a+b) Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)- like, catalytic domain Prolyl-tRNA synthetase (ProRS) Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF00587 tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) Domain Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. PFAM PF00587
A PF09181 ProRS-C_2 Prolyl-tRNA synthetase, C-terminal Domain Members of this family are predominantly found in prokaryotic prolyl-tRNA synthetase. They contain a zinc binding site, and adopt a structure consisting of alpha helices and antiparallel beta sheets arranged in 2 layers, in a beta-alpha-beta-alpha-beta motif [1]. PFAM PF09181
A PF03129 HGTP_anticodon Anticodon binding domain Domain This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [1] it is probably the anticodon binding domain [2]. PFAM PF03129

Gene Product Annotation Gene Ontology Consortium Homepage

Protein Modification Annotation

Type PDB Residue Nr. Description