Macromolecule Annotations for the Entities in PDB 1NH2

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A61-155 d1nh2a1 Alpha and beta proteins (a+b) TBP-like TATA-box binding protein-like TATA-box binding protein (TBP), C-terminal domain TATA-box binding protein (TBP), C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
A156-240 d1nh2a2 Alpha and beta proteins (a+b) TBP-like TATA-box binding protein-like TATA-box binding protein (TBP), C-terminal domain TATA-box binding protein (TBP), C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
B d1nh2b_ All alpha proteins Transcription factor IIA (TFIIA), alpha-helical domain Transcription factor IIA (TFIIA), alpha-helical domain Transcription factor IIA (TFIIA), alpha-helical domain Large chain TOA1, N-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
C d1nh2c_ All beta proteins Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Large chain TOA1, C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
D5-54 d1nh2d1 All alpha proteins Transcription factor IIA (TFIIA), alpha-helical domain Transcription factor IIA (TFIIA), alpha-helical domain Transcription factor IIA (TFIIA), alpha-helical domain Small chain TOA2, N-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
D55-121 d1nh2d2 All beta proteins Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Small chain TOA2, C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP) Domain PFAM PF00352
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP) Domain PFAM PF00352
D PF02268 TFIIA_gamma_N Transcription initiation factor IIA, gamma subunit, helical domain Domain Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIA (TFIIA) is a multimeric protein which facilitates the binding of TFIID to the TATA box. The N-terminal domain of the gamma subunit is a 4 helix bundle. PFAM PF02268
B PF03153 TFIIA Transcription factor IIA, alpha/beta subunit Family
D PF02751 TFIIA_gamma_C Transcription initiation factor IIA, gamma subunit Domain Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIA (TFIIA) is a multimeric protein which facilitates the binding of TFIID to the TATA box. The C-terminal domain of the gamma subunit is a 12 stranded beta-barrel. PFAM PF02751
C PF03153 TFIIA Transcription factor IIA, alpha/beta subunit Family

Protein Modification Annotation

Type PDB Residue Nr. Description