Macromolecule Annotations for the Entities in PDB 1NGM

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A61-155 d1ngma1 Alpha and beta proteins (a+b) TBP-like TATA-box binding protein-like TATA-box binding protein (TBP), C-terminal domain TATA-box binding protein (TBP), C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
A156-240 d1ngma2 Alpha and beta proteins (a+b) TBP-like TATA-box binding protein-like TATA-box binding protein (TBP), C-terminal domain TATA-box binding protein (TBP), C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
B d1ngmb_ Peptides TBP-binding domain of the transcription factor IIIb Brf1 subunit TBP-binding domain of the transcription factor IIIb Brf1 subunit TBP-binding domain of the transcription factor IIIb Brf1 subunit TBP-binding domain of the transcription factor IIIb Brf1 subunit Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
E61-155 d1ngme1 Alpha and beta proteins (a+b) TBP-like TATA-box binding protein-like TATA-box binding protein (TBP), C-terminal domain TATA-box binding protein (TBP), C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
E156-240 d1ngme2 Alpha and beta proteins (a+b) TBP-like TATA-box binding protein-like TATA-box binding protein (TBP), C-terminal domain TATA-box binding protein (TBP), C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
F d1ngmf_ Peptides TBP-binding domain of the transcription factor IIIb Brf1 subunit TBP-binding domain of the transcription factor IIIb Brf1 subunit TBP-binding domain of the transcription factor IIIb Brf1 subunit TBP-binding domain of the transcription factor IIIb Brf1 subunit Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
I61-155 d1ngmi1 Alpha and beta proteins (a+b) TBP-like TATA-box binding protein-like TATA-box binding protein (TBP), C-terminal domain TATA-box binding protein (TBP), C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
I156-240 d1ngmi2 Alpha and beta proteins (a+b) TBP-like TATA-box binding protein-like TATA-box binding protein (TBP), C-terminal domain TATA-box binding protein (TBP), C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
J d1ngmj_ Peptides TBP-binding domain of the transcription factor IIIb Brf1 subunit TBP-binding domain of the transcription factor IIIb Brf1 subunit TBP-binding domain of the transcription factor IIIb Brf1 subunit TBP-binding domain of the transcription factor IIIb Brf1 subunit Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
M61-155 d1ngmm1 Alpha and beta proteins (a+b) TBP-like TATA-box binding protein-like TATA-box binding protein (TBP), C-terminal domain TATA-box binding protein (TBP), C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
M156-240 d1ngmm2 Alpha and beta proteins (a+b) TBP-like TATA-box binding protein-like TATA-box binding protein (TBP), C-terminal domain TATA-box binding protein (TBP), C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
N d1ngmn_ Peptides TBP-binding domain of the transcription factor IIIb Brf1 subunit TBP-binding domain of the transcription factor IIIb Brf1 subunit TBP-binding domain of the transcription factor IIIb Brf1 subunit TBP-binding domain of the transcription factor IIIb Brf1 subunit Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP) Domain PFAM PF00352
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP) Domain PFAM PF00352
B PF07741 BRF1 Brf1-like TBP-binding domain Family

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
C,G,K,O 5'-D(*CP*TP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*GP*TP*TP*TP*TP*TP*T)- 3' (1NGM:C,G,K,O)
  • none
  • none
  • none
D,H,L,P 5'-D(*AP*AP*AP*AP*AP*AP*CP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*G)- 3' (1NGM:D,H,L,P)
  • none
  • none
  • none
A,E,I,M Transcription initiation factor TFIID (1NGM:A,E,I,M)
  • none
B,F,J,N Transcription factor IIIB BRF1 subunit (1NGM:B,F,J,N)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description