Macromolecule Annotations for the Entities in PDB 1NFD

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
E2-107 d1nfde1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain lambda variable domain, VL- lambda Hamster (Cricetulus griseus) [TaxId: 10029]
F1-114 d1nfdf1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Hamster (Cricetulus griseus) [TaxId: 10029]
G2-107 d1nfdg1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain lambda variable domain, VL- lambda Hamster (Cricetulus griseus) [TaxId: 10029]
H1-114 d1nfdh1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Hamster (Cricetulus griseus) [TaxId: 10029]
A1-117 d1nfda1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) T-cell antigen receptor Mouse (Mus musculus), alpha-chain [TaxId: 10090]
C1-117 d1nfdc1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) T-cell antigen receptor Mouse (Mus musculus), alpha-chain [TaxId: 10090]
B1-117 d1nfdb1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) T-cell antigen receptor Mouse (Mus musculus), beta-chain [TaxId: 10090]
D1-117 d1nfdd1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) T-cell antigen receptor Mouse (Mus musculus), beta-chain [TaxId: 10090]
E108-215 d1nfde2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain lambda constant domain, CL- lambda Hamster (Cricetulus griseus) [TaxId: 10029]
F115-228 d1nfdf2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Hamster (Cricetulus griseus) [TaxId: 10029]
G108-215 d1nfdg2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain lambda constant domain, CL- lambda Hamster (Cricetulus griseus) [TaxId: 10029]
H115-228 d1nfdh2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Hamster (Cricetulus griseus) [TaxId: 10029]
A118-213 d1nfda2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) T-cell antigen receptor Mouse (Mus musculus), alpha-chain [TaxId: 10090]
C118-213 d1nfdc2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) T-cell antigen receptor Mouse (Mus musculus), alpha-chain [TaxId: 10090]
B118-247 d1nfdb2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) T-cell antigen receptor Mouse (Mus musculus), beta-chain [TaxId: 10090]
D118-247 d1nfdd2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) T-cell antigen receptor Mouse (Mus musculus), beta-chain [TaxId: 10090]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
B PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
F PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
F PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
B PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
A PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
A PF09291 DUF1968 Domain of unknown function (DUF1968) Domain Members of this family are found in mammalian T-cell antigen receptor, and adopt an immunoglobulin-like beta-sandwich fold, with seven strands in two beta-sheets in a Greek-key topology. Their exact function has not, as yet, been determined. PFAM PF09291
E PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
E PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654

Protein Modification Annotation

Type PDB Residue Nr. Description