Macromolecule Annotations for the Entities in PDB 1NDO

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A1-154 d1ndoa1 All beta proteins ISP domain ISP domain Ring hydroxylating alpha subunit ISP domain Naphthalene 1,2-dioxygenase alpha subunit, N- domain Pseudomonas putida [TaxId: 303]
C1-154 d1ndoc1 All beta proteins ISP domain ISP domain Ring hydroxylating alpha subunit ISP domain Naphthalene 1,2-dioxygenase alpha subunit, N- domain Pseudomonas putida [TaxId: 303]
E1-154 d1ndoe1 All beta proteins ISP domain ISP domain Ring hydroxylating alpha subunit ISP domain Naphthalene 1,2-dioxygenase alpha subunit, N- domain Pseudomonas putida [TaxId: 303]
B d1ndob_ Alpha and beta proteins (a+b) Cystatin-like NTF2-like Ring hydroxylating beta subunit Naphthalene 1,2-dioxygenase beta subunit Pseudomonas putida [TaxId: 303]
D d1ndod_ Alpha and beta proteins (a+b) Cystatin-like NTF2-like Ring hydroxylating beta subunit Naphthalene 1,2-dioxygenase beta subunit Pseudomonas putida [TaxId: 303]
F d1ndof_ Alpha and beta proteins (a+b) Cystatin-like NTF2-like Ring hydroxylating beta subunit Naphthalene 1,2-dioxygenase beta subunit Pseudomonas putida [TaxId: 303]
A155-447 d1ndoa2 Alpha and beta proteins (a+b) TBP-like Bet v1-like Ring hydroxylating alpha subunit catalytic domain Naphthalene 1,2-dioxygenase alpha subunit, C- domain Pseudomonas putida [TaxId: 303]
C155-447 d1ndoc2 Alpha and beta proteins (a+b) TBP-like Bet v1-like Ring hydroxylating alpha subunit catalytic domain Naphthalene 1,2-dioxygenase alpha subunit, C- domain Pseudomonas putida [TaxId: 303]
E155-445 d1ndoe2 Alpha and beta proteins (a+b) TBP-like Bet v1-like Ring hydroxylating alpha subunit catalytic domain Naphthalene 1,2-dioxygenase alpha subunit, C- domain Pseudomonas putida [TaxId: 303]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
B PF00866 Ring_hydroxyl_B Ring hydroxylating beta subunit Domain This subunit has a similar structure to NTF-2 and scytalone dehydratase. PFAM PF00866
A PF00355 Rieske Rieske [2Fe-2S] domain Domain The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in this motif form a disulphide bridge, which stabilises the protein [4]. PFAM PF00355
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain) Domain This family is the catalytic domain of aromatic-ring- hydroxylating dioxygenase systems. The active site contains a non-heme ferrous ion coordinated by three ligands. PFAM PF00848

Protein Modification Annotation

Type PDB Residue Nr. Description