Macromolecule Annotations for the Entities in PDB 1NCD

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
L1-108 d1ncdl1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Mouse (Mus musculus), cluster 4 [TaxId: 10090]
H1-113 d1ncdh1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Mouse (Mus musculus), cluster 4 [TaxId: 10090]
L109-214 d1ncdl2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Mouse (Mus musculus) [TaxId: 10090]
H114-227 d1ncdh2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Mouse (Mus musculus) [TaxId: 10090]
N d1ncdn_ All beta proteins 6-bladed beta-propeller Sialidases Sialidases (neuraminidases) Influenza neuraminidase Influenza A virus, different strains [TaxId: 11320]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
H1 1ncdH01 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
H2 1ncdH02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
L1 1ncdL01 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
L2 1ncdL02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
N 1ncdN00 Mainly Beta 6 Propellor Neuraminidase

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
N INFLUENZA A SUBTYPE N9 NEURAMINIDASE (1NCD:N)
L IGG2A-KAPPA NC41 FAB (LIGHT CHAIN) (1NCD:L)
  • none
  • none
  • none
H IGG2A-KAPPA NC41 FAB (HEAVY CHAIN) (1NCD:H)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description